suba logo
AT2G47320.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
peroxisome 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT3G66654.2); Has 14608 Blast hits to 14586 proteins in 2637 species: Archae - 108; Bacteria - 6602; Metazoa - 2521; Fungi - 1253; Plants - 1050; Viruses - 0; Other Eukaryotes - 3074 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G47320-MONOMEREC:5.2.1.8eggNOG:ENOG410XQB4eggNOG:KOG0882EMBL:AC002337EMBL:AK318997EMBL:AY050450
EMBL:AY097351EMBL:AY568520EMBL:CP002685EnsemblPlants:AT2G47320EnsemblPlants:AT2G47320.1entrez:819345Gene3D:2.40.100.10
GeneID:819345Genevisible:Q94A16GO:GO:0003755GO:GO:0005739GO:GO:0005794GO:GO:0006457GO:GO:0042277
hmmpanther:PTHR11071hmmpanther:PTHR11071:SF200HOGENOM:HOG000006244InParanoid:Q94A16InterPro:IPR002130InterPro:IPR024936InterPro:IPR029000
KEGG:ath:AT2G47320OMA:SRISITNPANTHER:PTHR11071PaxDb:Q94A16Pfam:PF00160Pfam:Q94A16Pfscan:PS50072
PhylomeDB:Q94A16PIR:G84913PRIDE:Q94A16PRINTS:PR00153PRO:PR:Q94A16PROSITE:PS50072ProteinModelPortal:Q94A16
Proteomes:UP000006548RefSeq:NP_182254.1SMR:Q94A16STRING:3702.AT2G47320.1SUPFAM:SSF50891TAIR:AT2G47320TMHMM:TMhelix
UniGene:At.12226UniGene:At.25582UniProt:Q94A16
Coordinates (TAIR10) chr2:+:19427711..19428839
Molecular Weight (calculated) 26043.40 Da
IEP (calculated) 7.67
GRAVY (calculated) -0.22
Length 230 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKIKPQALL QQSKKKKGPS RISITNIVIY TLAVLLLVFV LFSAYRRWTH RSEIPTHNGR SVLEDAAFPG MKNVDLPRFA TLDTGKGSVT IELFKDTAPN
101: VVDQFMKFCQ DGYFKGFLFS RVVKHFVIQA GDSAEFDAVK DWALDRKNID TSLKHEEFMV GTPKAKNEQG GFEFFIVSAQ IKDLNEKLTV FGRVSKGQDV
201: VQEIEEVETD DQYQPKSPIE IMSVTLLQDM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)