AT2G47310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : flowering time control protein-related / FCA gamma-related | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
flowering time control protein-related / FCA gamma-related; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), WW/Rsp5/WWP (InterPro:IPR001202), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding;abscisic acid binding (TAIR:AT4G16280.4); Has 13219 Blast hits to 10590 proteins in 472 species: Archae - 0; Bacteria - 420; Metazoa - 8082; Fungi - 1429; Plants - 2128; Viruses - 0; Other Eukaryotes - 1160 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:19423791..19426846 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58369.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 512 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERRAPNAFP GAPPPVPYYH NNYNNPPHHQ IHPPPPPHHH IAAVGFHKYP QNDNRDQRFN QPHYSGQQQN MIVDQSNNAP PPFPPSPCGG SSLRKRRSQS 101: ATDNADGSIA KLYVAPISKT ATEYDIRQVF EKYGNVTEII LPKDKMTGER AAYCFIKYKK VEEGNAAIAA LTEQFTFPGE MLPVKVRFAE AERERIGFAP 201: VQLPDNPKLY VRCLNKQTTK MEVNEVFSRY GIIEDIYMAL DDMKICRGYA FVQFSCKEMA LAAIKALNGL FTIRGSDQPL IVRFADPKKP RLGEQRSTFN 301: TPPAMQHFDP NWHSQPYPQW ENKEPAPPRV VQHHDFSSQP NHFPHQNTQA VSEVHKPLHQ DIPPANFEKH QKSETASVET RSDGQKISSH SNAFHEDQNT 401: VSSECDWSEH TCPNGNKYYF HCITCESTWE KPDEYSMYER WLKEQTRLQD EKIKSPPLNN ESQEAIENSE QVESDVLQQN GELQQPSLST ADQENNVVVY 501: PVTTLAVETT CS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)