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AT2G47220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.608
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DOMAIN OF UNKNOWN FUNCTION 724 5
Curator
Summary (TAIR10)
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
Computational
Description (TAIR10)
DOMAIN OF UNKNOWN FUNCTION 724 5 (DUF5); FUNCTIONS IN: 3'-5'-exoribonuclease activity, oxidoreductase activity, RNA binding; INVOLVED IN: metabolic process, RNA processing; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: lateral root emergence; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Protein of unknown function DUF724 (InterPro:IPR007930), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 2 (TAIR:AT1G11420.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YXA1eggNOG:KOG0725eggNOG:KOG1067EMBL:CP002685EnsemblPlants:AT2G47220EnsemblPlants:AT2G47220.1entrez:819335
Gene3D:3.30.230.70GeneID:819335GO:GO:0005634GO:GO:0009570Gramene:AT2G47220.1hmmpanther:PTHR31917hmmpanther:PTHR31917:SF9
InterPro:IPR001247InterPro:IPR007930InterPro:IPR020568InterPro:IPR027408KEGG:ath:AT2G47220ncoils:CoilPaxDb:F4IL21
Pfam:PF01138Pfam:PF05266PRIDE:F4IL21ProteinModelPortal:F4IL21Proteomes:UP000006548RefSeq:NP_182244.2SMR:F4IL21
STRING:3702.AT2G47220.1SUPFAM:SSF54211TAIR:AT2G47220tair10-symbols:ATDUF5tair10-symbols:DUF5UniGene:At.48604UniProt:F4IL21
Coordinates (TAIR10) chr2:+:19384059..19386472
Molecular Weight (calculated) 52405.60 Da
IEP (calculated) 5.24
GRAVY (calculated) -0.49
Length 469 amino acids
Sequence (TAIR10)
(BLAST)
001: MIPMTLTPSA MGLWLVPNHV SVKIPFGNRE ILVETGLMGR QASSAVTVTD GETIVFTSVC LADVPSEPSD FLPLYVHYQE RFSAVGRTSG GFFKREGRTK
101: DHEVTFLCLP AASYITGQEE LKACLNDWKS NGLVVSGLVR DQREKLIQEV SSTFSGKLNI LSPLAQGSGN NMGGSVMNGN TPPSLDSNES VSPVTSSPVI
201: TSTPLEHTEA GTKGKTVPKK TLQPMEMNQL ERSEDNSRKR KRGELEHNSD LNETVLPSDW TPDPVKNFAA DDDDEETKAK DATMVLPFVK KSPVWKIYES
301: MEVFKRVPQS PHFSPLFEAK EDFREGFALG MMVTFSGVLE KVEDLKTDVP IRQLNSLKDS FTELEKHGFT VTAPLSRIAK LLALKDRQLK ILEELKVFDK
401: EMKDESSKKH KAEQEFGEME RKILEVKNKV LELQKQEAAL EKQKDATYEK ICKMESRARD LGVELEDVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)