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AT2G47110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.853
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:26232565 (2015): cytosol cytosolic ribosomes
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : ubiquitin 6
Curator
Summary (TAIR10)
polyubiquitin gene
Computational
Description (TAIR10)
ubiquitin 6 (UBQ6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosolic small ribosomal subunit, intracellular; EXPRESSED IN: whole plant, male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 5 (TAIR:AT3G62250.1); Has 12701 Blast hits to 7389 proteins in 781 species: Archae - 108; Bacteria - 19; Metazoa - 5539; Fungi - 1408; Plants - 3106; Viruses - 188; Other Eukaryotes - 2333 (source: NCBI BLink).
Protein Annotations
BioGrid:4658eggNOG:COG1998eggNOG:COG5272eggNOG:KOG0004EMBL:AC004411EMBL:AF375416EMBL:AY088370
EMBL:AY142033EMBL:AY143810EMBL:CP002685EMBL:J05540EnsemblPlants:AT2G47110EnsemblPlants:AT2G47110.1EnsemblPlants:AT2G47110.2
entrez:819323GeneID:819323Genevisible:P59232GO:GO:0003735GO:GO:0005634GO:GO:0005794GO:GO:0006412
GO:GO:0006511GO:GO:0022627GO:GO:0046872Gramene:AT2G47110.1Gramene:AT2G47110.2hmmpanther:PTHR10666InParanoid:P59232
IntAct:P59232InterPro:IPR000626InterPro:IPR002906InterPro:IPR011332InterPro:IPR019954InterPro:IPR019956InterPro:IPR029071
KEGG:ath:AT2G47110KO:K02977OMA:MSILKYYPaxDb:P59232Pfam:P59232Pfam:PF00240Pfam:PF01599
Pfscan:PS50053PIR:D36571PRIDE:P59232PRINTS:PR00348PRO:PR:P59232PROSITE:PS00299PROSITE:PS50053
ProteinModelPortal:P59232Proteomes:UP000006548Reactome:R-ATH-110312Reactome:R-ATH-110314Reactome:R-ATH-110320Reactome:R-ATH-156827Reactome:R-ATH-174184
Reactome:R-ATH-179409Reactome:R-ATH-1799339Reactome:R-ATH-349425Reactome:R-ATH-450302Reactome:R-ATH-450321Reactome:R-ATH-5358346Reactome:R-ATH-5632684
Reactome:R-ATH-5655862Reactome:R-ATH-5656121Reactome:R-ATH-5656169Reactome:R-ATH-5696394Reactome:R-ATH-5696395Reactome:R-ATH-5696397Reactome:R-ATH-5696400
Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-72689Reactome:R-ATH-72695
Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-917729Reactome:R-ATH-975956Reactome:R-ATH-975957Reactome:R-ATH-983168RefSeq:NP_001189768.1
RefSeq:NP_566095.1scanprosite:PS00299SMART:SM00213SMART:SM01402SMR:P59232STRING:3702.AT2G47110.1SUPFAM:SSF54236
SUPFAM:SSF57829TAIR:AT2G47110tair10-symbols:UBQ6UniGene:At.27680UniGene:At.75284UniProt:P59232
Coordinates (TAIR10) chr2:+:19344701..19345174
Molecular Weight (calculated) 17812.80 Da
IEP (calculated) 10.46
GRAVY (calculated) -0.74
Length 157 amino acids
Sequence (TAIR10)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)