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AT2G47020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peptide chain release factor 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peptide chain release factor 1; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: mitochondrion, cytoplasm; CONTAINS InterPro DOMAIN/s: Peptide chain release factor 1 (InterPro:IPR004373), Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 1 (TAIR:AT3G62910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0216eggNOG:KOG2726EMBL:BT030058EMBL:CP002685EnsemblPlants:AT2G47020EnsemblPlants:AT2G47020.1entrez:819316
ExpressionAtlas:A2RVR7Gene3D:3.30.160.20GeneID:819316GO:GO:0005737GO:GO:0016149Gramene:AT2G47020.1hmmpanther:PTHR11075
hmmpanther:PTHR11075:SF9InterPro:IPR000352InterPro:IPR004373InterPro:IPR005139InterPro:IPR014720KEGG:ath:AT2G47020KO:K02835
OMA:DHRSQQRPfam:PF00472Pfam:PF03462PhylomeDB:A2RVR7Proteomes:UP000006548RefSeq:NP_182225.3SMART:SM00937
SMR:A2RVR7STRING:3702.AT2G47020.1SUPFAM:SSF75620TAIR:AT2G47020TIGRfam:TIGR00019TIGRFAMs:TIGR00019UniGene:At.43988
UniProt:A2RVR7
Coordinates (TAIR10) chr2:-:19320090..19322279
Molecular Weight (calculated) 46831.20 Da
IEP (calculated) 7.36
GRAVY (calculated) -0.49
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MRVLIRPNFL SNLIRYCSRG THSHDRSLRS VLSSNMIRLY TTGMEPQLSP DLIKIMDQRL SAIEHRNAVL QKLINQPEYS PEEFSRANKE LRKLRDSMLL
101: INDLRAKQKE IDGLKSLVSE SSDDKDMLDL AVGELDEAVE EEKRLQTLLL KSLLPKDEAD ERDCILEVRA GTGGEEASLF AMDIFRMYER YSQKKGWKFD
201: IVDITESDMK GYKEASAAIC GASVYGKLKF ESGIHRVQRI PITEKSGRIH TSAISVAILP QADEVDVQLR NEDLRIDTYR SGGSGGQHAN TTNSAVRIIH
301: LPTGMMVSIQ DERSQHMNRA KALKVLCARL YEIERLRIQS SRSKLRSDQI GSGDRSGRIR TYNFPQGRVT DHRVGITHHA IEDMMQGENL DMFIDALLLR
401: QEMDAIASFS STS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)