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AT2G46900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ1QeggNOG:KOG2422EMBL:AC004411EMBL:AY039928
EMBL:AY142575EMBL:CP002685EnsemblPlants:AT2G46900EnsemblPlants:AT2G46900.1
entrez:819303GeneID:819303GO:GO:0005829Gramene:AT2G46900.1
hmmpanther:PTHR22684hmmpanther:PTHR22684:SF0HOGENOM:HOG000006133IntAct:O80734
InterPro:IPR006994KEGG:ath:AT2G46900ncoils:CoilOMA:STYMVTA
PANTHER:PTHR22684Pfam:PF04910PhylomeDB:O80734PIR:T02197
Proteomes:UP000006548RefSeq:NP_566090.1SMR:O80734STRING:3702.AT2G46900.1
TAIR:AT2G46900UniGene:At.12571UniProt:O80734
Coordinates (TAIR10) chr2:+:19269678..19271987
Molecular Weight (calculated) 71425.20 Da
IEP (calculated) 5.51
GRAVY (calculated) -0.78
Length 627 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGRLLKKVL QEHEDSKLQK HHEEEEEEDE EESGARSSIN PFDLLNDGDE DPEEIDDETI AEKKNEDADH QSSVADHVQP VSKNKSKKKK KKKNKESGSN
101: VPKAEMTLDE TLEALGLNAN SKQDKVQETK PNADSSKKAS SRFVLEIDSK YLNLENELRR TYGSKAMRSF ESESGSQGGS SSRRGGRRGV HHITKTVLVS
201: PKENWSRWDR SFSMEFLETK DGNNYFRYTH SSSYEQAQRA FQAAQAIHDL NGVASVLIHN PYHIESLITM ADYFKFVGEN DMAADSIGKC LYGLERAWHP
301: MFTPFQGNCR LEFNHDENKL FFKTLFTHMR NMDRRGCHRS ALEVCKLLLS LDTSNPVGAL FCVDYFALRA EEYAWLEQFS EEYRNDNSLW LFPNFSYSLA
401: IARVYLEKME PTSSSEATPR DTSKQSSLDL MTQALKLHPT VLNKLVEKVP LKDQAWTKIL KHSYFRSDES KIPSLDHLIK IYVERNYLIW RLPDVQKLLR
501: SAADLVIESL EQDGTEAESW LCVRLEAFSS ENNQYSHLST HDFSDSMPTL PPDNLQNFVA DPRMVGGEQM AEGGGRGQHQ APPPRPRDLA NRSPLAVLIE
601: SILPWANFGD GEDEIAHDAH HQPDNNG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)