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AT2G46890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.640
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1295)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system, integral to membrane, cytoplasm; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), Protein of unknown function DUF1295 (InterPro:IPR010721); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1295) (TAIR:AT1G18180.1); Has 1895 Blast hits to 1895 proteins in 350 species: Archae - 2; Bacteria - 474; Metazoa - 74; Fungi - 141; Plants - 112; Viruses - 0; Other Eukaryotes - 1092 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3752eggNOG:KOG4650EMBL:AC004411EMBL:AC005310
EMBL:AK117460EMBL:BT020410EMBL:CP002685EnsemblPlants:AT2G46890
EnsemblPlants:AT2G46890.1entrez:819302GeneID:819302GO:GO:0005737
GO:GO:0006629GO:GO:0016021GO:GO:0016627Gramene:AT2G46890.1
hmmpanther:PTHR32251hmmpanther:PTHR32251:SF14HOGENOM:HOG000240596IntAct:O81042
InterPro:IPR001104InterPro:IPR010721KEGG:ath:AT2G46890OMA:WSIRLTH
Pfam:PF06966Pfscan:PS50244PhylomeDB:O81042PIR:E84908
PIR:T02690PROSITE:PS50244Proteomes:UP000006548RefSeq:NP_182212.1
STRING:3702.AT2G46890.1TAIR:AT2G46890TMHMM:TMhelixUniGene:At.36436
UniProt:O81042
Coordinates (TAIR10) chr2:-:19266879..19268134
Molecular Weight (calculated) 38119.20 Da
IEP (calculated) 9.46
GRAVY (calculated) 0.10
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MNRNLRNAIV AFLAPLPSIV FYLTFLSNYS SSSDSELSSI QSWCLNHPLL LANLLFFLNV NVLFWVIGLL QSSHWMIDVY WTVIPVMLVH YFASHPLSQY
101: NKLRSMIVIT LTWIWSIRLT HNYFRRENWE WGAREDWRFN DLRKQYGKHW WWLSFFSVYV SQQIFLIGIC LPLYVIHSID EPLNIWDFIS SAICLTGIVM
201: AYFADTQLHE FVTGNQKLKE QGKPKIPNLD SGLWRYSRHP NYLGEQLWWW GLVIFAWNLG QGWTLIGALV NTLCLVYVTI LVERRMVKQQ YRAEAYRAYQ
301: KTTSVWIPWF KSHAAATKDK NT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)