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AT2G46680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homeobox 7
Curator
Summary (TAIR10)
encodes a putative transcription factor that contains a homeodomain closely linked to a leucine zipper motif. Transcript is detected in all tissues examined. Is transcriptionally regulated in an ABA-dependent manner and may act in a signal transduction pathway which mediates a drought response.
Computational
Description (TAIR10)
homeobox 7 (HB-7); FUNCTIONS IN: transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to water deprivation, abscisic acid mediated signaling pathway, regulation of transcription, DNA-dependent, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox 12 (TAIR:AT3G61890.1); Has 11865 Blast hits to 11755 proteins in 611 species: Archae - 0; Bacteria - 26; Metazoa - 9035; Fungi - 216; Plants - 2052; Viruses - 14; Other Eukaryotes - 522 (source: NCBI BLink).
Protein Annotations
BioGrid:4615eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:AC005819EMBL:AY045826EMBL:AY091364EMBL:CP002685
EMBL:X67032EnsemblPlants:AT2G46680EnsemblPlants:AT2G46680.1entrez:819280ExpressionAtlas:P46897Gene3D:1.10.10.60GeneID:819280
Genevisible:P46897GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009414GO:GO:0009737GO:GO:0043565
GO:GO:0045893hmmpanther:PTHR24326hmmpanther:PTHR24326:SF122HOGENOM:HOG000006310InParanoid:P46897InterPro:IPR000047InterPro:IPR001356
InterPro:IPR003106InterPro:IPR009057InterPro:IPR017970ncoils:CoilOMA:TMFESETPaxDb:P46897Pfam:P46897
Pfam:PF00046Pfam:PF02183Pfscan:PS50071PhylomeDB:P46897PIR:H84905PIR:S47137PRINTS:PR00031
PRO:PR:P46897PROSITE:PS00027PROSITE:PS50071ProteinModelPortal:P46897Proteomes:UP000006548RefSeq:NP_182191.1scanprosite:PS00027
SMART:SM00389SMR:P46897STRING:3702.AT2G46680.1SUPFAM:SSF46689TAIR:AT2G46680tair10-symbols:ATHB-7tair10-symbols:ATHB7
tair10-symbols:HB-7UniGene:At.136UniProt:P46897
Coordinates (TAIR10) chr2:-:19165777..19166773
Molecular Weight (calculated) 30512.40 Da
IEP (calculated) 5.49
GRAVY (calculated) -1.30
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MTEGGEYSPA MMSAEPFLTM KKMKKSNHNK NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV QLARELGLQP RQVAIWFQNK RARWKSKQLE TEYNILRQNY
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)