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AT2G46650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytochrome B5 isoform C
Curator
Summary (TAIR10)
member of Cytochromes b5
Computational
Description (TAIR10)
cytochrome B5 isoform C (CB5-C); CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: cytochrome B5 isoform D (TAIR:AT5G48810.1); Has 3777 Blast hits to 3746 proteins in 458 species: Archae - 2; Bacteria - 26; Metazoa - 909; Fungi - 1474; Plants - 787; Viruses - 3; Other Eukaryotes - 576 (source: NCBI BLink).
Protein Annotations
BioGrid:4612eggNOG:COG5274eggNOG:KOG0537EMBL:AC005819
EMBL:AC006418EMBL:AK175189EMBL:AK175442EMBL:AY087658
EMBL:BT025600EMBL:CP002685EnsemblPlants:AT2G46650EnsemblPlants:AT2G46650.1
entrez:819277Gene3D:3.10.120.10GeneID:819277Genevisible:Q9ZNV4
GO:GO:0005789GO:GO:0016021GO:GO:0020037GO:GO:0046872
GO:GO:0055114Gramene:AT2G46650.1hmmpanther:PTHR19359hmmpanther:PTHR19359:SF25
HOGENOM:HOG000039853InParanoid:Q9ZNV4IntAct:Q9ZNV4InterPro:IPR001199
InterPro:IPR018506KEGG:ath:AT2G46650OMA:NLISFHDPaxDb:Q9ZNV4
Pfam:PF00173Pfam:Q9ZNV4Pfscan:PS50255PIR:E84905
PRIDE:Q9ZNV4PRINTS:PR00363PRO:PR:Q9ZNV4PROSITE:PS00191
PROSITE:PS50255ProteinModelPortal:Q9ZNV4Proteomes:UP000006548Reactome:R-ATH-196836
RefSeq:NP_182188.1scanprosite:PS00191SMART:SM01117SMR:Q9ZNV4
STRING:3702.AT2G46650.1SUPFAM:SSF55856TAIR:AT2G46650tair10-symbols:ATCB5-C
tair10-symbols:B5 #1tair10-symbols:CB5-CTMHMM:TMhelixUniGene:At.22562
UniGene:At.67083UniProt:Q9ZNV4
Coordinates (TAIR10) chr2:+:19151807..19152394
Molecular Weight (calculated) 14873.90 Da
IEP (calculated) 5.99
GRAVY (calculated) -0.23
Length 132 amino acids
Sequence (TAIR10)
(BLAST)
001: MANLISFHDV AKHKCKNDCW ILIHGKVYDI STFMDEHPGG DNVLLAVTGK DASIDFEDVN HSKDAKELMK KYCIGDVDQS TVPVTQQYIP PWEKESTAAE
101: TTKEESGKKL LIYLIPLLIL GVAFALRFYN NK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)