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AT2G46630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2MJeggNOG:ENOG410Z451EMBL:AC005819EMBL:AC006418
EMBL:CP002685EnsemblPlants:AT2G46630EnsemblPlants:AT2G46630.1entrez:3768746
GeneID:3768746Gramene:AT2G46630.1hmmpanther:PTHR33472hmmpanther:PTHR33472:SF1
HOGENOM:HOG000154027KEGG:ath:AT2G46630OMA:HNYNQNHPIR:C84905
Proteomes:UP000006548RefSeq:NP_182186.1TAIR:AT2G46630UniGene:At.69591
UniProt:Q9ZNU3
Coordinates (TAIR10) chr2:+:19145529..19146713
Molecular Weight (calculated) 43248.80 Da
IEP (calculated) 11.17
GRAVY (calculated) -1.41
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNIRPWFRL SSIARPTAQG SSDPPPPQPR PTSRSSLVVR PPAKQPSPPR QRQPRSPPRQ QDPPSPPRQQ QQPLTPPRQK APPTSPPQER SPYHSPPSRH
101: MSPPTPPKAA TPPPPPPRSS YTSPPSPKEV QEALPPRKPN SPPSPAHSSR STTSESVKTR SPSESENHRK APSPRVLSPY SLPASLLHSE RETTQKNILT
201: AEKTSQTHET NHHNQNHNHD YNQNHNYNQN HSYNQNQNHQ GNNPKKMHRQ PSSSDSENIM STRVITIAGE NKGAVMEILR SPQGNKTGGS GTHSSRVSHG
301: TGEKGRRLQS SSSSSSDEGE GKKKTTKNVP NKGNSNLPMK AFMNSNVQMI NNSIVYNSTA SHHDPGVHLK ISRKPGSDNG FHVSDYGNNG GYTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)