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AT2G46610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G61860.1); Has 503542 Blast hits to 501535 proteins in 22149 species: Archae - 10994; Bacteria - 307576; Metazoa - 94329; Fungi - 13527; Plants - 29141; Viruses - 36248; Other Eukaryotes - 11727 (source: NCBI BLink).
Protein Annotations
BioGrid:4608eggNOG:COG0724eggNOG:KOG0106EMBL:AC006418EMBL:AK317202EMBL:AY065237EMBL:BT000995
EMBL:CP002685EnsemblPlants:AT2G46610EnsemblPlants:AT2G46610.1EnsemblPlants:AT2G46610.2entrez:819273ExpressionAtlas:Q9ZPX8Gene3D:3.30.70.330
GeneID:819273Genevisible:Q9ZPX8GO:GO:0000166GO:GO:0003723GO:GO:0005681GO:GO:0006397GO:GO:0008380
GO:GO:0016607hmmpanther:PTHR24012HOGENOM:HOG000276234InParanoid:Q9ZPX8IntAct:Q9ZPX8InterPro:IPR000504InterPro:IPR012677
iPTMnet:Q9ZPX8KEGG:ath:AT2G46610KO:K12893OMA:RTRERDMPaxDb:Q9ZPX8Pfam:PF00076Pfam:Q9ZPX8
Pfscan:PS50102PhylomeDB:Q9ZPX8PIR:A84905PRIDE:Q9ZPX8PRO:PR:Q9ZPX8PROSITE:PS50102ProteinModelPortal:Q9ZPX8
Proteomes:UP000006548RefSeq:NP_182184.1RefSeq:NP_973702.1SMART:SM00360SMR:Q9ZPX8STRING:3702.AT2G46610.1SUPFAM:SSF54928
TAIR:AT2G46610tair10-symbols:At-RS31atair10-symbols:RS31aUniGene:At.13832UniGene:At.28553UniProt:Q9ZPX8
Coordinates (TAIR10) chr2:-:19136769..19138492
Molecular Weight (calculated) 29682.60 Da
IEP (calculated) 10.79
GRAVY (calculated) -1.31
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MRHVYVGNFD YDTRHSDLER LFSKFGRVKR VDMKSGYAFV YFEDERDAED AIRRTDNTTF GYGRRKLSVE WAKDFQGERG KPRDGKAVSN QRPTKTLFVI
101: NFDPIRTRER DMERHFEPYG KVLNVRMRRN FAFVQFATQE DATKALDSTH NSKLLDKVVS VEYALREAGE REDRYAGSRR RRSPSPVYRR RPSPDYTRRR
201: SPEYDRYKGP APYERRKSPD YGRRSSDYGR ARARSPGYDR SRSPIQRARG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)