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AT2G46600.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.871
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: pinoid-binding protein 1 (TAIR:AT5G54490.1); Has 2760 Blast hits to 2760 proteins in 443 species: Archae - 0; Bacteria - 4; Metazoa - 1146; Fungi - 226; Plants - 931; Viruses - 0; Other Eukaryotes - 453 (source: NCBI BLink).
Protein Annotations
BioGrid:4607DIP:DIP-52859NeggNOG:COG5126eggNOG:KOG0028
EMBL:AC006418EMBL:AF410313EMBL:AY088553EMBL:AY093725
EMBL:AY363866EMBL:CP002685EnsemblPlants:AT2G46600EnsemblPlants:AT2G46600.1
entrez:819272EvolutionaryTrace:Q9ZPX9Gene3D:1.10.238.10GeneID:819272
Genevisible:Q9ZPX9GO:GO:0005509GO:GO:0010091Gramene:AT2G46600.1
hmmpanther:PTHR10891hmmpanther:PTHR10891:SF624HOGENOM:HOG000238343InParanoid:Q9ZPX9
IntAct:Q9ZPX9InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247
KEGG:ath:AT2G46600OMA:KEDAQGMPaxDb:Q9ZPX9PDB:3H4S
PDBsum:3H4SPfam:PF13833Pfam:Q9ZPX9Pfscan:PS50222
PhylomeDB:Q9ZPX9PIR:H84904PRIDE:Q9ZPX9PRO:PR:Q9ZPX9
PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:Q9ZPX9Proteomes:UP000006548
RefSeq:NP_566082.1scanprosite:PS00018SMR:Q9ZPX9STRING:3702.AT2G46600.1
SUPFAM:SSF47473TAIR:AT2G46600UniGene:At.13832UniGene:At.28553
UniProt:Q9ZPX9
Coordinates (TAIR10) chr2:+:19136070..19136477
Molecular Weight (calculated) 15169.20 Da
IEP (calculated) 4.06
GRAVY (calculated) -0.39
Length 135 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPTEKSMLL ETTSTTKMET KYEDMLPVMA EKMDVEEFVS ELCKGFSLLA DPERHLITAE SLRRNSGILG IEGMSKEDAQ GMVREGDLDG DGALNQTEFC
101: VLMVRLSPEM MEDAETWLEK ALTQELCNHN LSSMP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)