AT2G46590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Dof-type zinc finger DNA-binding family protein | ||||||||||||
| Curator Summary (TAIR10) |
encodes a protein containing Dof zinc finger motifs. expression is limited to vascular system of the mother plant. recessive mutation is inherited as maternal-effect and expression is not detected in the embryo. mutants are defective in seed germination. mutants are more dependent on light and cold treatment and less sensitive to gibberellin during seed germination. | ||||||||||||
| Computational Description (TAIR10) |
DOF AFFECTING GERMINATION 2 (DAG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to cold, response to light stimulus, seed germination; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT3G61850.4); Has 2459 Blast hits to 1971 proteins in 113 species: Archae - 0; Bacteria - 6; Metazoa - 102; Fungi - 58; Plants - 1098; Viruses - 0; Other Eukaryotes - 1195 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:19133832..19134905 | ||||||||||||
| Molecular Weight (calculated) | 39116.10 Da | ||||||||||||
| IEP (calculated) | 9.35 | ||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||
| Length | 357 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMNVKPMEQI MIPNNNTHQP NTTSNARPNT ILTSNGVSTA GATVSGVSNN NNNTAVVAER KARPQEKLNC PRCNSTNTKF CYYNNYSLTQ PRYFCKGCRR 101: YWTEGGSLRN VPVGGSSRKN KRSSSSSSSN ILQTIPSSLP DLNPPILFSN QIHNKSKGSS QDLNLLSFPV MQDQHHHHVH MSQFLQMPKM EGNGNITHQQ 201: QPSSSSSVYG SSSSPVSALE LLRTGVNVSS RSGINSSFMP SGSMMDSNTV LYTSSGFPTM VDYKPSNLSF STDHQGLGHN SNNRSEALHS DHHQQGRVLF 301: PFGDQMKELS SSITQEVDHD DNQQQKSHGN NNNNNNSSPN NGYWSGMFST TGGGSSW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)