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AT2G46550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.978
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3); Has 72 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWEDeggNOG:ENOG410YWRWEMBL:AC006418EMBL:CP002685EnsemblPlants:AT2G46550EnsemblPlants:AT2G46550.1entrez:819267
ExpressionAtlas:Q9ZPY4GeneID:819267GO:GO:0016021Gramene:AT2G46550.1hmmpanther:PTHR33868hmmpanther:PTHR33868:SF2ncoils:Coil
OMA:EMENIGPPhylomeDB:Q9ZPY4PIR:C84904Proteomes:UP000006548RefSeq:NP_566080.1STRING:3702.AT2G46550.1TAIR:AT2G46550
TMHMM:TMhelixUniGene:At.27980UniGene:At.74121UniProt:Q9ZPY4
Coordinates (TAIR10) chr2:-:19112264..19113457
Molecular Weight (calculated) 44410.10 Da
IEP (calculated) 9.22
GRAVY (calculated) -0.80
Length 397 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAEARAVW QRTVNRCFVQ EDAKRAPKLT YCQSSSSSTA SSTKQVEVSG SSPRVSVEPR TQSSCAGFMP LPRNPNFPDL LPHNTRLWSH PHHQFQVNKK
101: QPLEDEVNNQ GVSEKKSELG AGEKQGKSFN SESFQEFIEL METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL
201: DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK
301: QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)