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AT2G46420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein 1589 of unknown function
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G61700.1); Has 251 Blast hits to 249 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 223; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJF5eggNOG:ENOG4111H9HEMBL:AC006526EMBL:AY052357
EMBL:BT002631EMBL:CP002685EnsemblPlants:AT2G46420EnsemblPlants:AT2G46420.1
entrez:819250ExpressionAtlas:Q9SKD8GeneID:819250Gramene:AT2G46420.1
hmmpanther:PTHR31871hmmpanther:PTHR31871:SF9HOGENOM:HOG000241257InterPro:IPR006476
OMA:NDIVEYFPfam:PF09713PhylomeDB:Q9SKD8PIR:F84902
Proteomes:UP000006548RefSeq:NP_566074.1TAIR:AT2G46420TIGRfam:TIGR01589
TIGRFAMs:TIGR01589UniGene:At.23265UniProt:Q9SKD8
Coordinates (TAIR10) chr2:+:19054891..19056830
Molecular Weight (calculated) 39561.60 Da
IEP (calculated) 4.52
GRAVY (calculated) -0.38
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MKNGQELQSS TQVSHESQGE QKVNLSVEAP IQDSGSVSAS SNDGRKVSRQ DIELVQNLIE RCLQLYMSRD EVVKTLLTRA RIDPGFTTLV WQKLEEENAE
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)