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AT2G46410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF.
Computational
Description (TAIR10)
CAPRICE (CPC); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT5G53200.1); Has 2615 Blast hits to 2615 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2602; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
BioGrid:4584eggNOG:ENOG410JXC4eggNOG:ENOG411043TEMBL:AB004871EMBL:AC006526EMBL:AY074637EMBL:AY519521
EMBL:CP002685EnsemblPlants:AT2G46410EnsemblPlants:AT2G46410.1entrez:819249Gene3D:1.10.10.60GeneID:819249Genevisible:O22059
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0007275GO:GO:0009751GO:GO:0009753
GO:GO:0009913GO:GO:0010063Gramene:AT2G46410.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF620HOGENOM:HOG000238078InParanoid:O22059
IntAct:O22059InterPro:IPR001005InterPro:IPR009057InterPro:IPR017877KEGG:ath:AT2G46410KO:K09422OMA:SDKAEKM
PaxDb:O22059Pfam:O22059Pfam:PF00249Pfscan:PS50090PhylomeDB:O22059PIR:E84902PRIDE:O22059
PRO:PR:O22059ProteinModelPortal:O22059Proteomes:UP000006548RefSeq:NP_182164.1SMART:SM00717SMR:O22059STRING:3702.AT2G46410.1
SUPFAM:SSF46689TAIR:AT2G46410tair10-symbols:CPCUniGene:At.224UniProt:O22059
Coordinates (TAIR10) chr2:-:19049315..19050185
Molecular Weight (calculated) 11385.70 Da
IEP (calculated) 10.21
GRAVY (calculated) -1.02
Length 94 amino acids
Sequence (TAIR10)
(BLAST)
1: MFRSDKAEKM DKRRRRQSKA KASCSEEVSS IEWEAVKMSE EEEDLISRMY KLVGDRWELI AGRIPGRTPE EIERYWLMKH GVVFANRRRD FFRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)