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AT2G46400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WRKY DNA-binding protein 46
Curator
Summary (TAIR10)
member of WRKY Transcription Factor; Group III
Computational
Description (TAIR10)
WRKY DNA-binding protein 46 (WRKY46); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY family transcription factor (TAIR:AT4G23810.1); Has 3385 Blast hits to 2951 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3370; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
BioGrid:4583DNASU:819248eggNOG:ENOG410JAHGeggNOG:ENOG410YBEVEMBL:AC006526EMBL:AY046275EMBL:AY080812
EMBL:AY117210EMBL:CP002685EnsemblPlants:AT2G46400EnsemblPlants:AT2G46400.1entrez:819248Gene3D:2.20.25.80GeneID:819248
Genevisible:Q9SKD9GO:GO:0000987GO:GO:0003700GO:GO:0005730GO:GO:0006351GO:GO:0006355GO:GO:0010200
GO:GO:0043565GO:GO:0044212GO:GO:0048527Gramene:AT2G46400.1hmmpanther:PTHR32096hmmpanther:PTHR32096:SF20HOGENOM:HOG000006380
InParanoid:Q9SKD9InterPro:IPR003657KEGG:ath:AT2G46400ncoils:CoilOMA:NIFRTFSPaxDb:Q9SKD9Pfam:PF03106
Pfam:Q9SKD9Pfscan:PS50811PhylomeDB:Q9SKD9PIR:D84902PRIDE:Q9SKD9PRO:PR:Q9SKD9PROSITE:PS50811
ProteinModelPortal:Q9SKD9Proteomes:UP000006548RefSeq:NP_182163.1SMART:SM00774SMR:Q9SKD9STRING:3702.AT2G46400.1SUPFAM:0050605
SUPFAM:SSF118290TAIR:AT2G46400tair10-symbols:ATWRKY46tair10-symbols:WRKY46UniGene:At.26510UniProt:Q9SKD9
Coordinates (TAIR10) chr2:-:19043676..19044754
Molecular Weight (calculated) 33636.50 Da
IEP (calculated) 5.94
GRAVY (calculated) -0.62
Length 295 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMEEKLVIN ELELGKELAN RLMNNLKHTS SVDSNKTLIS DILRIYQNAI FMLSFNQDKN ILKRSLEIDG KDSKNVFKKR KVSEKNTEKV KVFVATEQEN
101: GSIDDGHCWR KYGQKEIHGS KNPRAYYRCT HRFTQDCLAV KQVQKSDTDP SLFEVKYLGN HTCNNITSPK TTTNFSVSLT NTNIFEGNRV HVTEQSEDMK
201: PTKSEEVMIS LEDLENKKNI FRTFSFSNHE IENGVWKSNL FLGNFVEDLS PATSGSAITS EVLSAPAAVE NSETADSYFS SLDNIIDFGQ DWLWS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)