suba logo
AT2G46140.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to desiccation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Water stress and hypersensitive response domain (InterPro:IPR013990), Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (TAIR:AT1G01470.1); Has 348 Blast hits to 348 proteins in 99 species: Archae - 0; Bacteria - 22; Metazoa - 0; Fungi - 0; Plants - 325; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
DNASU:819221eggNOG:ENOG410IXHNeggNOG:ENOG4111PUKEMBL:AC005397EMBL:AY086763EMBL:BT004206EMBL:BT005673
EMBL:CP002685EnsemblPlants:AT2G46140EnsemblPlants:AT2G46140.1entrez:819221EvolutionaryTrace:O82355Gene3D:2.60.40.10GeneID:819221
Genevisible:O82355GO:GO:0005829GO:GO:0005886GO:GO:0009269GO:GO:0048046Gramene:AT2G46140.1hmmpanther:PTHR31459
hmmpanther:PTHR31459:SF3HOGENOM:HOG000237668InParanoid:O82355InterPro:IPR004864InterPro:IPR013783InterPro:IPR013990KEGG:ath:AT2G46140
OMA:HSHVDVSPaxDb:O82355PDB:1YYCPDBsum:1YYCPfam:O82355Pfam:PF03168PhylomeDB:O82355
PIR:B84899PRIDE:O82355PRO:PR:O82355ProteinModelPortal:O82355Proteomes:UP000006548RefSeq:NP_182137.1SMART:SM00769
SMR:O82355STRING:3702.AT2G46140.1SUPFAM:0051044TAIR:AT2G46140UniGene:At.36550UniProt:O82355
Coordinates (TAIR10) chr2:+:18959163..18960362
Molecular Weight (calculated) 17847.40 Da
IEP (calculated) 4.33
GRAVY (calculated) 0.12
Length 166 amino acids
Sequence (TAIR10)
(BLAST)
001: MASADEKVVE EKASVISSLL DKAKGFFAEK LANIPTPEAT VDDVDFKGVT RDGVDYHAKV SVKNPYSQSI PICQISYILK SATRTIASGT IPDPGSLVGS
101: GTTVLDVPVK VAYSIAVSLM KDMCTDWDID YQLDIGLTFD IPVVGDITIP VSTQGEIKLP SLRDFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)