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AT2G46130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WRKY DNA-binding protein 43
Curator
Summary (TAIR10)
member of WRKY Transcription Factor; Group II-c
Computational
Description (TAIR10)
WRKY DNA-binding protein 43 (WRKY43); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 24 (TAIR:AT5G41570.1); Has 3486 Blast hits to 3032 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3471; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY80eggNOG:ENOG410YINNEMBL:AC005397EMBL:AF404861EMBL:AF442391EMBL:AK117931EMBL:BT004701
EMBL:CP002685EnsemblPlants:AT2G46130EnsemblPlants:AT2G46130.1entrez:819220ExpressionAtlas:Q8GY11Gene3D:2.20.25.80GeneID:819220
Genevisible:Q8GY11GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0043565hmmpanther:PTHR31221hmmpanther:PTHR31221:SF7
HOGENOM:HOG000237589InParanoid:Q8GY11IntAct:Q8GY11InterPro:IPR003657KEGG:ath:AT2G46130OMA:HNHPCEEPaxDb:Q8GY11
Pfam:PF03106Pfam:Q8GY11Pfscan:PS50811PhylomeDB:Q8GY11PIR:A84899PRIDE:Q8GY11PRO:PR:Q8GY11
PROSITE:PS50811ProteinModelPortal:Q8GY11Proteomes:UP000006548RefSeq:NP_182136.2RefSeq:NP_850446.1SMART:SM00774SMR:Q8GY11
STRING:3702.AT2G46130.1SUPFAM:0050605SUPFAM:SSF118290TAIR:AT2G46130tair10-symbols:ATWRKY43tair10-symbols:WRKY43UniGene:At.26514
UniProt:Q8GY11
Coordinates (TAIR10) chr2:+:18957254..18957669
Molecular Weight (calculated) 12952.50 Da
IEP (calculated) 9.99
GRAVY (calculated) -0.93
Length 109 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGLVDSSRD KKMKNPRFSF RTKSDADILD DGYRWRKYGQ KSVKNSLYPR SYYRCTQHMC NVKKQVQRLS KETSIVETTY EGIHNHPCEE LMQTLTPLLH
101: QLQFLSKFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)