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AT2G46080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.557
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFY4eggNOG:ENOG410YDX5EMBL:AC005397EMBL:AY072305EMBL:AY114548EMBL:CP002685EnsemblPlants:AT2G46080
EnsemblPlants:AT2G46080.1entrez:819216GeneID:819216GO:GO:0009793Gramene:AT2G46080.1hmmpanther:PTHR31509hmmpanther:PTHR31509:SF3
HOGENOM:HOG000029142InterPro:IPR004320KEGG:ath:AT2G46080ncoils:CoilOMA:CETHKNIPfam:PF03087PhylomeDB:O82360
PIR:E84898Proteomes:UP000006548RefSeq:NP_566063.1STRING:3702.AT2G46080.1TAIR:AT2G46080UniGene:At.20870UniProt:O82360
Coordinates (TAIR10) chr2:-:18948317..18949360
Molecular Weight (calculated) 39354.30 Da
IEP (calculated) 4.94
GRAVY (calculated) -0.24
Length 347 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRPQDPPRG FFPFGNPFRM LSSKGSDLSP WLLSLLNGFE LRLEERLKKL MPKNKDDILT LSWMKLAMES LCETHKNINT LITDLQLPVS DWEEKWVDVY
101: LNISVRLLDL CNAFSSELTR LNQGDLFLKC VLHNLQSDSG EKYLQARSSL DSWRQHVNTN NPRIENCRAV LDSLVKSLSL PKVKNSPKGK VLMRAFYGVK
201: VQTVYICSVF TAAWSDSTKD LFDLPVSEKP LWAKVFTDMQ SVVNAEIRDM LSSGRTTILK ELESVDASVE KLYPMIQDGV DPVEVEFFKD NVMELGTQAE
301: KLSQGLDQLL EEVDSFFKLT LRGRDVLLCN LRSSDSISGN AVGEDVD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)