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AT2G46060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.779
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transmembrane protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transmembrane protein-related; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3522 (InterPro:IPR021910), EGF-like region, conserved site (InterPro:IPR013032); Has 154 Blast hits to 154 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH6HeggNOG:ENOG410XPM8EMBL:AY091042EMBL:BT004375EMBL:CP002685EnsemblPlants:AT2G46060EnsemblPlants:AT2G46060.1
entrez:819214ExpressionAtlas:Q8RWX6GeneID:819214GO:GO:0016021Gramene:AT2G46060.1hmmpanther:PTHR14319hmmpanther:PTHR14319:SF3
HOGENOM:HOG000084866InterPro:IPR013032InterPro:IPR021910KEGG:ath:AT2G46060OMA:SPNGHIWPfam:PF12036PhylomeDB:Q8RWX6
PROSITE:PS00022Proteomes:UP000006548RefSeq:NP_850444.1scanprosite:PS00022TAIR:AT2G46060TMHMM:TMhelixUniGene:At.28256
UniProt:Q8RWX6
Coordinates (TAIR10) chr2:-:18941355..18945000
Molecular Weight (calculated) 89796.00 Da
IEP (calculated) 7.48
GRAVY (calculated) 0.09
Length 807 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEILFLLLR TLVVFSCALS ICNCLQDAAD NNGNFFTVSS FRYPESEVRP YDTRYIRVDL PPWFSSLNVA IESDVDITAK SISKISKSLL PVICFRDGSP
101: PLPDASTNAL QGLELGRFFN GSFERAQDSE IAQQCYPMQK NITLRLTNEQ ISPGAWYVGL FNGIGATRTQ GKMIVRSSAF SFSANISVEG CKTATMWGPF
201: CNQTIYPLSC SRFDNQTASV ISCADSFPSS CLTGAETKTY ALDVDGIAEQ LVIMASNVKV DSNESYLMCY ARFEAFASET LHDYAADIHK VPLIVNKPKA
301: GRWYIVISLS GRENRFAQGT NSSSRVCFSI NVKVLGCPVG KAGPNCGQQI YILQAVMRRG WLTPFQSYYF PVNDASLSGS STNFPLEPIV SNFSSIPELD
401: TSTWTYFLMN IPQGGSGGHI HFRLLSDSTI QYEVYLRFGG LPTIDDRDYY YVNRTSASRS MFFSLYNSSK EMVDFYILYA REGTWSFGLR QLIDSNTPAA
501: SRGSPTLVSL SLERCPRGCS SYGQCRYAFD ANGLTSYSFC SCDRTHGGFD CSIEIVSHQE HIVQSIALIA SNAAALLPAY WALRQREYPE WVLFTSSGIS
601: SALYHACDVG TWCVLSYNVL QFMDFWLSFM AVVGTFVYLS TAGEAVKRTI HTVVAILTAL LALTQATRAS NIIIVLAIGS LGLLIGFLVE FVTKYRSYCG
701: SAGFSLNMLD RPRAVKEWFS NLIKTLKKRF RWGFVAAGLV AFTMAAISFK VETSSSYWMW HSIWHFTIYT SSFFFLCSKI AIVNHENLAH NGADNYELTR
801: QDSLSRN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)