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AT2G45920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.944
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : U-box domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G61390.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1393-MONOMERBioGrid:4536EC:6.3.2.-eggNOG:ENOG410IGJ6eggNOG:ENOG410XV39EMBL:AC004665EMBL:AK175182
EMBL:BT015764EMBL:BT020181EMBL:CP002685EnsemblPlants:AT2G45920EnsemblPlants:AT2G45920.1entrez:819200Gene3D:3.30.40.10
Gene3D:3.40.50.620GeneID:819200Genevisible:Q683D5GO:GO:0004842GO:GO:0016874Gramene:AT2G45920.1hmmpanther:PTHR22849
hmmpanther:PTHR22849:SF50HOGENOM:HOG000115794InParanoid:Q683D5IntAct:Q683D5InterPro:IPR003613InterPro:IPR013083InterPro:IPR014729
iPTMnet:Q683D5KEGG:ath:AT2G45920ncoils:CoilOMA:NRITESYPaxDb:Q683D5Pfam:PF04564Pfam:Q683D5
Pfscan:PS51698PhylomeDB:Q683D5PIR:T02455PRIDE:Q683D5PRO:PR:Q683D5PROSITE:PS51698ProteinModelPortal:Q683D5
Proteomes:UP000006548RefSeq:NP_182116.2SMART:SM00504SMR:Q683D5STRING:3702.AT2G45920.1SUPFAM:SSF52402SUPFAM:SSF57850
TAIR:AT2G45920UniGene:At.22480UniPathway:UPA00143UniProt:Q683D5
Coordinates (TAIR10) chr2:+:18899363..18901097
Molecular Weight (calculated) 46026.70 Da
IEP (calculated) 9.48
GRAVY (calculated) -0.56
Length 400 amino acids
Sequence (TAIR10)
(BLAST)
001: MMGKSGSQQL LMDEKIYVAV GSDLGNKSTL VWAIQNTGGK EFCIVHVHQP LYRKEKEKTQ KILDKYLQKC RQMQVCAEMI HIKMESVEKG IIQLISERNV
101: KKLVMGAASD TRYSMRMADL LSTKAIYIRQ EAPATCCIWF TCKGYLVYKR ESIMGNTSLE YASTSSGQDS VRSRGSVIPS RQFTISRGNG NVYQLAVFEA
201: EKSKKEASLE AFKHQEVVKE KNEAIKRGKE WESAYLEELK QRKETEMELK KVREKLEKMR YISENRITES YMLVQKLQDK YNLATKVLRK AKEERDLLIK
301: GRDIAIIEVE ELRKEVSRSD EHREAPQYFI CPISLEVMKD PQLAADGFTY EAEAISTWLQ GGHETSPMTN TKLHHTKLVP NLALRSAIQE WLHASSSFRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)