suba logo
AT2G45850.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AT hook motif DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT3G61310.1); Has 793 Blast hits to 789 proteins in 47 species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi - 13; Plants - 747; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IR56eggNOG:ENOG410YDXWEMBL:AC004665EMBL:AF367271EMBL:AY059157EMBL:AY062699EMBL:AY114678
EMBL:BR000345EMBL:CP002685EnsemblPlants:AT2G45850EnsemblPlants:AT2G45850.1EnsemblPlants:AT2G45850.2entrez:819193GeneID:819193
Genevisible:O80834GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT2G45850.1Gramene:AT2G45850.2
hmmpanther:PTHR31500hmmpanther:PTHR31500:SF10HOGENOM:HOG000116506IntAct:O80834InterPro:IPR005175InterPro:IPR017956KEGG:ath:AT2G45850
OMA:HNSPNIRPaxDb:O80834Pfam:O80834Pfam:PF03479Pfscan:PS51742PhylomeDB:O80834PIR:T02462
PRIDE:O80834PRO:PR:O80834PROSITE:PS51742ProteinModelPortal:O80834Proteomes:UP000006548RefSeq:NP_182109.1RefSeq:NP_850442.1
SMART:SM00384SMR:O80834STRING:3702.AT2G45850.1SUPFAM:SSF117856TAIR:AT2G45850UniGene:At.12707UniGene:At.48596
UniProt:O80834
Coordinates (TAIR10) chr2:-:18871901..18873457
Molecular Weight (calculated) 36337.00 Da
IEP (calculated) 10.53
GRAVY (calculated) -0.39
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
301: DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)