AT2G45720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.967 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G01830.1); Has 2921 Blast hits to 1773 proteins in 216 species: Archae - 2; Bacteria - 19; Metazoa - 422; Fungi - 286; Plants - 1867; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:18834468..18836129 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59525.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.62 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||||||||||
| Length | 553 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVEEKTGNVT LLDQTVEDLL LQAQELVPIA LSKARTVKGF SSRWRVIISR LEKIPTCLSD LSSHPCFSKH TLCKEQLQAV LETLKETIEL ANVCVSEKQE 101: GKLKMQSDLD SLSAKIDLSL KDCGLLMKTG VLGEVTKPLS SSTQDLETFS VRELLARLQI GHLESKRKAL EQLVEVMKED EKAVITALGR TNVASLVQLL 201: TATSPSVREN AVTVICSLAE SGGCENWLIS ENALPSLIRL LESGSIVAKE KAVISLQRMS ISSETSRSIV GHGGVGPLIE ICKTGDSVSQ SASACTLKNI 301: SAVPEVRQNL AEEGIVKVMI NILNCGILLG SKEYAAECLQ NLTSSNETLR RSVISENGIQ TLLAYLDGPL PQESGVAAIR NLVGSVSVET YFKIIPSLVH 401: VLKSGSIGAQ QAAASTICRI ATSNETKRMI GESGCIPLLI RMLEAKASGA REVAAQAIAS LVTVPRNCRE VKRDEKSVTS LVMLLEPSPG NSAKKYAVSG 501: LAALCSSRKC KKLMVSHGAV GYLKKLSELE VPGSKKLLER IEKGKLKSFF SRK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)