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AT2G45500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.962
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AAA-type ATPase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G27120.1); Has 35953 Blast hits to 33523 proteins in 3228 species: Archae - 1492; Bacteria - 15478; Metazoa - 4981; Fungi - 3500; Plants - 2910; Viruses - 26; Other Eukaryotes - 7566 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G45500-MONOMEReggNOG:COG0464eggNOG:KOG0740EMBL:CP002685EnsemblPlants:AT2G45500EnsemblPlants:AT2G45500.1entrez:819158
ExpressionAtlas:A8MRR2Gene3D:3.40.50.300GeneID:819158GO:GO:0005524Gramene:AT2G45500.1hmmpanther:PTHR23074hmmpanther:PTHR23074:SF86
HOGENOM:HOG000225146InParanoid:A8MRR2InterPro:IPR003593InterPro:IPR003959InterPro:IPR003960InterPro:IPR007330InterPro:IPR027417
ncoils:CoilOMA:RIAYKLKPaxDb:A8MRR2Pfam:PF00004PhylomeDB:A8MRR2PRIDE:A8MRR2PROSITE:PS00674
ProteinModelPortal:A8MRR2Proteomes:UP000006548RefSeq:NP_182074.4scanprosite:PS00674SMART:SM00382SMART:SM00745SMR:A8MRR2
STRING:3702.AT2G45500.1SUPFAM:SSF52540TAIR:AT2G45500UniGene:At.36623UniProt:A8MRR2
Coordinates (TAIR10) chr2:-:18749973..18752636
Molecular Weight (calculated) 54389.80 Da
IEP (calculated) 9.87
GRAVY (calculated) -0.47
Length 491 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFLRGIIDS FSSILNEESK KDPSVSSSST SSESMNGIDG VPVTNERIAY KLKGYFDLAK EEIAKGVRAE EWGLHDDALL HYRNAQRIMN EATSTPSPSY
101: ISSSEKEKVR SYREKISNWQ NQVSERLQAL GKRTGVGMSE NKRTVAYPSS ASVSSTASRY RKTLSQKTPV ARGGVATPRN PKDAAASPKP VKESGNVYDD
201: KLVEMINTTI VDRSPSVKWD DVAGLNGAKQ ALLEMVILPA KRRDLFTGLR RPARGLLLFG PPGNGKTMLA KAVASESQAT FFNVSASSLT SKWVGEAEKL
301: VKTLFQVAIS RQPSVIFMDE IDSIMSTRST SENEASRRLK SEFLIQFDGV TSNPDDLVII IGATNKPQEL DDAVLRRLVK RIYVPLPDSN VRKLLFKTKL
401: KCQPHSLSDG DIDKIVKETE GYSGSDLQAL CEEAAMMPIR ELGANILTIQ ANKVRSLRYD DFRKSMAVIR PSLSKSKWEE LERWNSEFGS N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)