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AT2G45470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.500
plasma membrane 0.500
ASURE: extracellular,plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 16618929
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 12805588
TAIR : plasma membrane 16618929
TAIR : plasma membrane 17644812
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:25641898 (2015): plasma membrane
  • PMID:24393051 (2015): extracellular region
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:16635983 (2006): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:16602701 (2006): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:15574830 (2004): plasma membrane
  • PMID:14517339 (2003): plasma membrane
  • PMID:12805588 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FASCICLIN-like arabinogalactan protein 8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FASCICLIN-like arabinogalactan protein 8 (FLA8); LOCATED IN: anchored to plasma membrane, apoplast, plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan-protein 10 (TAIR:AT3G60900.1); Has 14155 Blast hits to 6880 proteins in 856 species: Archae - 79; Bacteria - 4506; Metazoa - 1333; Fungi - 788; Plants - 1999; Viruses - 868; Other Eukaryotes - 4582 (source: NCBI BLink).
Protein Annotations
BioGrid:4491eggNOG:ENOG410IJMZeggNOG:ENOG410YIMZEMBL:AC002387EMBL:AF195889EMBL:AK220841EMBL:AY088542
EMBL:AY094443EMBL:AY149956EMBL:CP002685EnsemblPlants:AT2G45470EnsemblPlants:AT2G45470.1entrez:819155Gene3D:2.30.180.10
GeneID:819155Genevisible:O22126GO:GO:0005886GO:GO:0009505GO:GO:0031225GO:GO:0046658GO:GO:0048046
Gramene:AT2G45470.1hmmpanther:PTHR32382hmmpanther:PTHR32382:SF5HOGENOM:HOG000240961InParanoid:O22126InterPro:IPR000782InterPro:IPR033254
KEGG:ath:AT2G45470MINT:MINT-8069154OMA:DPQKLHKPANTHER:PTHR32382PaxDb:O22126Pfam:O22126Pfam:PF02469
Pfscan:PS50213PhylomeDB:O22126PIR:H84890PRIDE:O22126PRO:PR:O22126PROSITE:PS50213ProteinModelPortal:O22126
Proteomes:UP000006548RefSeq:NP_566043.1SMART:SM00554SMR:O22126STRING:3702.AT2G45470.1SUPFAM:SSF82153TAIR:AT2G45470
tair10-symbols:AGP8tair10-symbols:FLA8UniGene:At.19671UniGene:At.69345UniGene:At.71483UniProt:O22126
Coordinates (TAIR10) chr2:-:18742797..18744059
Molecular Weight (calculated) 43077.00 Da
IEP (calculated) 5.38
GRAVY (calculated) 0.13
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASQTFSLL AFTFSLLAFA STVSSHNITQ ILADSPDYSS FNSYLSQTKL ADEINSRTTI TVLVLNNGAM SALAGKHPLS VIKSALSLLV LLDYYDPQKL
101: HKISKGTTLS TTLYQTTGNA PGNLGFVNIT DLKGGKVGFG SAASGSKLDS SYTKSVKQIP YNISILEIDA PIIAPGVLTA PAPSASLSNI TGLLEKAGCK
201: TFANLLVSSG VLKTYESAVE KGLTVFAPSD EAFKAEGVPD LTKLTQAEVV SLLEYHALAE YKPKGSLKTN KNNISTLATN GAGKFDLTTS TSGDEVILHT
301: GVAPSRLADT VLDATPVVIF TVDNVLLPAE LFGKSKSPSP APAPEPVTAP TPSPADAPSP TAASPPAPPT DESPESAPSD SPTGSANSKS ANAAVGVSTP
401: SLFTALVTIA AIAVSVSLCS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)