AT2G45460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SMAD/FHA domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SMAD/FHA domain-containing protein ; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); Has 90361 Blast hits to 52813 proteins in 2902 species: Archae - 1014; Bacteria - 17012; Metazoa - 41214; Fungi - 7482; Plants - 4542; Viruses - 303; Other Eukaryotes - 18794 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18737054..18741690 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101434.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.61 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||||||||||||||
| Length | 915 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASTAAEQDE RKIVSVASNA SQDIKTAAAA SRISSQNGAS PSPSLNSKDF IVSAAANIAS QPLQNYDSNV WGVLTAISSN ARKRRQGINI LLTSDEHCLG 101: RLPCHASYQV ESNAISGNHC KVFRKPVTGG DGDDVTVFMV DTSTNGTFLN WERLTKNGPE VRVQHGDIIS LAVPPEHEKA FAFVYREVLG NNPALSCMNR 201: KRKAEDTTCE IKRQKGIGIS GPNGPISLDD FKSLQRSNTE LRKQLEAQVL TIDTLRNESR SIVEHHESDY LSISTEISLH LQEIKQIKES TAKSFHNELI 301: ELRDQLDTKQ KELAQVNKLS AEQKNSIDEL GERVSASLQT LSEANEVIQS QKASIAELKT GLDEERNQRR EERETAIAEL KAAIHRCQIE AQEELKRFSD 401: AAMRHEREQQ EVINKMKESE KEKSMQVETL MSKLEDTRQR LVCSENRNRL LEAQVSEEQL AFADAQKKLE ELDLQVKRLQ KDLDSEKAAR EEAWAKVSAL 501: ELEISAAVRD LDVERQRHRG ARERIMLRET QMRAFYSTTE EISALFAKQQ EQLKTMQRTL EDEDNCDNTS LDIDLNPINR SPNRANTQGD KRATSHLNFA 601: ARASSSTSGQ RSTRNEVVDT SCEDADATQK HDCEIMSQEG QNTQEAEYPS SDKVAKGGFG SDIEGIGTAP TSGTDPVGTE QVNETQSPGN DYERNDHLRK 701: SIILAGDTMQ IDCETQVHES VQIEGAVLLL RNPNDRRDTQ DIEGVGTIGT SDLLASEVAG SWANSTNPSV HGENETERSR EDEESQTQKI KEVTIVQDSA 801: GQIGESQTKP TSPGVLVTNK DDAERGVINE PVGITDQGKI KHGTRSDSET ESCSDSDDDH EKEKHNPVSD SDTEGSDMND DKGSLSSDPD TERSHEVDGD 901: QKKQVDTMDE DDKAT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)