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AT2G45440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30394608 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : dihydrodipicolinate synthase
Curator
Summary (TAIR10)
Encodes a protein that likely has dihydropicolinate synthase activity based on its mutant phenotype of decreased lysine levels and increased aspartate levels. The mutant also has increased levels of threonine. The enzyme is predicted to localize to the chloroplast.
Computational
Description (TAIR10)
dihydrodipicolinate synthase (DHDPS2); FUNCTIONS IN: dihydrodipicolinate synthase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate, metabolic process, diaminopimelate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Dihydrodipicolinate synthase subfamily (InterPro:IPR005263), Dihydrodipicolinate synthetase (InterPro:IPR002220), Dihydrodipicolinate synthetase, active site (InterPro:IPR020625), Dihydrodipicolinate synthetase, conserved site (InterPro:IPR020624); BEST Arabidopsis thaliana protein match is: dihydrodipicolinate synthase 1 (TAIR:AT3G60880.2); Has 13334 Blast hits to 13334 proteins in 2656 species: Archae - 353; Bacteria - 9459; Metazoa - 101; Fungi - 305; Plants - 96; Viruses - 0; Other Eukaryotes - 3020 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0329eggNOG:ENOG410IJ4QEMBL:AK227890EnsemblPlants:AT2G45440
EnsemblPlants:AT2G45440.1entrez:819152ExpressionAtlas:Q0WSN6Gene3D:3.20.20.70
GeneID:819152GO:GO:0008840GO:GO:0009089Gramene:AT2G45440.1
gramene_pathway:4.2.1.52gramene_pathway:4.4.1.5gramene_pathway:PWY-5097gramene_pathway:PWY-5386
gramene_plant_reactome:1119273gramene_plant_reactome:1119419gramene_plant_reactome:6876840gramene_plant_reactome:6877375
HAMAP:MF_00418hmmpanther:PTHR12128hmmpanther:PTHR12128:SF15InterPro:IPR002220
InterPro:IPR005263InterPro:IPR013785InterPro:IPR020624InterPro:IPR020625
KEGG:00261+4.3.3.7KEGG:00300+4.3.3.7KEGG:ath:AT2G45440KO:K01714
OMA:HEATESWPANTHER:PTHR12128PaxDb:Q0WSN6Pfam:PF00701
Pfam:Q9FVC8PhylomeDB:Q0WSN6PRIDE:Q0WSN6PRINTS:PR00146
PROSITE:PS00665PROSITE:PS00666ProteinModelPortal:Q0WSN6RefSeq:NP_182068.1
scanprosite:PS00665scanprosite:PS00666SMART:SM01130SMR:Q0WSN6
STRING:3702.AT2G45440.1SUPFAM:SSF51569TAIR:AT2G45440tair10-symbols:DHDPS2
TIGRfam:TIGR00674TIGRFAMs:TIGR00674UniGene:At.12311unipathway:UPA00034
UniProt:Q0WSN6UniProt:Q9FVC8
Coordinates (TAIR10) chr2:+:18731294..18732867
Molecular Weight (calculated) 40294.60 Da
IEP (calculated) 7.64
GRAVY (calculated) -0.15
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MAALKGYGLC SMDSALQFPC PKLFNSYKRR SSKWVSPKAA VVPNFHLPMR SLEVKNRTNT DDIKALRVIT AIKTPYLPDG RFDLEAYDDL VNIQIQNGAE
101: GVIVGGTTGE GQLMSWDEHI MLIGHTVNCF GGSIKVIGNT GSNSTREAIH ATEQGFAVGM HAALHINPYY GKTSIEGLIA HFQSVLHMGP TIIYNVPGRT
201: GQDIPPRAIF KLSQNPNLAG VKECVGNKRV EEYTENGVVV WSGNDDECHD SRWDYGATGV ISVTSNLVPG LMRKLMFEGR NSSLNSKLLP LMAWLFHEPN
301: PIGINTALAQ LGVSRPVFRL PYVPLPLSKR LEFVKLVKEI GREHFVGEKD VQALDDDDFI LIGRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)