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AT2G45420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : LOB domain-containing protein 18
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOB domain-containing protein 18 (LBD18); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Uncharacterised conserved protein UCP038127, LOB (InterPro:IPR017394); BEST Arabidopsis thaliana protein match is: Lateral organ boundaries (LOB) domain family protein (TAIR:AT4G00220.1); Has 12357 Blast hits to 5209 proteins in 472 species: Archae - 12; Bacteria - 2131; Metazoa - 4972; Fungi - 448; Plants - 3332; Viruses - 154; Other Eukaryotes - 1308 (source: NCBI BLink).
Protein Annotations
BioGrid:4486eggNOG:ENOG410IWWVeggNOG:ENOG410YA3NEMBL:AB473853EMBL:AC002387EMBL:AF447891EMBL:BT025716
EMBL:CP002685EnsemblPlants:AT2G45420EnsemblPlants:AT2G45420.1entrez:819150GeneID:819150Genevisible:O22131GO:GO:0005634
GO:GO:0010089GO:GO:0010311Gramene:AT2G45420.1hmmpanther:PTHR31529hmmpanther:PTHR31529:SF3HOGENOM:HOG000237548InParanoid:O22131
InterPro:IPR004883InterPro:IPR017394iPTMnet:O22131KEGG:ath:AT2G45420OMA:PQPLFFTPaxDb:O22131Pfam:O22131
Pfam:PF03195Pfscan:PS50891PhylomeDB:O22131PIR:C84890PIRSF:PIRSF038127PRIDE:O22131PRO:PR:O22131
PROSITE:PS50891ProteinModelPortal:O22131Proteomes:UP000006548RefSeq:NP_850436.1STRING:3702.AT2G45420.1TAIR:AT2G45420tair10-symbols:LBD18
UniGene:At.21365UniProt:O22131
Coordinates (TAIR10) chr2:+:18718601..18720445
Molecular Weight (calculated) 27220.10 Da
IEP (calculated) 8.09
GRAVY (calculated) -0.17
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGGGNTITA VGGGGGGCGG GGSSGGGGSS GGGGGGPCGA CKFLRRKCVP GCIFAPYFDS EQGSAYFAAV HKVFGASNVS KLLLHIPVHR RSDAVVTICY
101: EAQARIRDPI YGCVAHIFAL QQQVVNLQAE VSYLQAHLAS LELPQPQTRP QPMPQPQPLF FTPPPPLAIT DLPASVSPLP STYDLASIFD QTTSSSAWAT
201: QQRRFIDPRH QYGVSSSSSS VAVGLGGENS HDLQALAHEL LHRQGSPPPA ATDHSPSRTM SR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)