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AT2G45380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.979
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G34070.1); Has 171 Blast hits to 170 proteins in 31 species: Archae - 2; Bacteria - 0; Metazoa - 68; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JBXBeggNOG:ENOG411164NEMBL:CP002685EnsemblPlants:AT2G45380
EnsemblPlants:AT2G45380.1entrez:819145ExpressionAtlas:F4IG49GeneID:819145
Gramene:AT2G45380.1hmmpanther:PTHR13105hmmpanther:PTHR13105:SF8InParanoid:F4IG49
InterPro:IPR019376PaxDb:F4IG49Pfam:PF10248PRIDE:F4IG49
ProteinModelPortal:F4IG49Proteomes:UP000006548RefSeq:NP_850433.2TAIR:AT2G45380
UniGene:At.28771UniGene:At.36643UniProt:F4IG49
Coordinates (TAIR10) chr2:-:18699588..18703093
Molecular Weight (calculated) 55153.70 Da
IEP (calculated) 6.30
GRAVY (calculated) -0.84
Length 494 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLDKVLEDE VVEDTGESQV FNLLNPEFVD FDTCLDPITN ELPTSANQKA LFRTHSQKER VERVRAILSG RSIENNRRTE TTKPAGELRR EKTPAKKGNS
101: NSSSVDHRFT SASRAFTQKK LDDLKSLFVS LASKSHSNDQ YVSYPVFQEY FGLSGSLGER IFDMVTQHRK DDKMTFEDLV IAKMTFEDLV IAKSTLPLEF
201: LGSSRILSKI AEVKRGIRKM GDPFGGRFGG FRGSLFGGRD PFDDPFFSRP FEDLLEPSNT FSSGASFSNA HKNNGGRGLT IEELPSDEEV EERKDIGIDD
301: QEHASSVNKP SVEHPEDDSD AERKIQNVNQ RSDFNRREGT QSRANTFRHH ISKVTYGGIH GAYYTSTRTR RKDGDGMVVE ESKEADKTTG EATHRISRGI
401: NDKGHSVTRK LNSSGGVEST QTLHNLDEDE LSGFEEAWKG NSSLGKHEFT GSDNSFGGWV LPSLDQIRRQ TDQSQTGSSR SATGAKKVVR INIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)