suba logo
AT2G45220.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: membrane, plant-type cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Carbohydrate-binding/sugar hydrolysis domain (InterPro:IPR006633), Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G51490.1); Has 2773 Blast hits to 2723 proteins in 340 species: Archae - 10; Bacteria - 616; Metazoa - 1; Fungi - 203; Plants - 1907; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G45220-MONOMERBioGrid:4466EC:3.1.1.11eggNOG:COG4677
eggNOG:ENOG410IF38EMBL:AC002387EMBL:AF361829EMBL:AK220726
EMBL:CP002685EnsemblPlants:AT2G45220EnsemblPlants:AT2G45220.1entrez:819130
Gene3D:1.20.140.40Gene3D:2.160.20.10GeneID:819130Genevisible:O22149
GO:GO:0005576GO:GO:0005618GO:GO:0009617GO:GO:0009620
GO:GO:0016020GO:GO:0030599GO:GO:0042545GO:GO:0043086
GO:GO:0045330GO:GO:0045490GO:GO:0046910GO:GO:0050829
GO:GO:0071944Gramene:AT2G45220.1gramene_pathway:3.1.1.11gramene_pathway:PWY-1081
hmmpanther:PTHR31707hmmpanther:PTHR31707:SF11HOGENOM:HOG000217409InParanoid:O22149
IntAct:O22149InterPro:IPR000070InterPro:IPR006501InterPro:IPR006633
InterPro:IPR011050InterPro:IPR012334InterPro:IPR033131KEGG:00040+3.1.1.11
KEGG:00500+3.1.1.11KEGG:ath:AT2G45220KO:K01051OMA:FLTHNSN
PaxDb:O22149Pfam:O22149Pfam:PF01095Pfam:PF04043
PhylomeDB:O22149PIR:H84887PRIDE:O22149PRO:PR:O22149
PROSITE:PS00503ProteinModelPortal:O22149Proteomes:UP000006548RefSeq:NP_566038.1
scanprosite:PS00503SMART:SM00722SMART:SM00856SMR:O22149
STRING:3702.AT2G45220.1SUPFAM:SSF101148SUPFAM:SSF51126TAIR:AT2G45220
TIGRfam:TIGR01614TIGRFAMs:TIGR01614TMHMM:TMhelixUniGene:At.27946
UniPathway:UPA00545UniProt:O22149
Coordinates (TAIR10) chr2:-:18644281..18646394
Molecular Weight (calculated) 55979.60 Da
IEP (calculated) 9.37
GRAVY (calculated) -0.19
Length 511 amino acids
Sequence (TAIR10)
(BLAST)
001: MMAFRAYIIN FVILCILVAS TVSGYNQKDV KAWCSQTPNP KPCEYFLTHN SNNEPIKSES EFLKISMKLV LDRAILAKTH AFTLGPKCRD TREKAAWEDC
101: IKLYDLTVSK INETMDPNVK CSKLDAQTWL STALTNLDTC RAGFLELGVT DIVLPLMSNN VSNLLCNTLA INKVPFNYTP PEKDGFPSWV KPGDRKLLQS
201: STPKDNAVVA KDGSGNFKTI KEAIDAASGS GRFVIYVKQG VYSENLEIRK KNVMLRGDGI GKTIITGSKS VGGGTTTFNS ATVAAVGDGF IARGITFRNT
301: AGASNEQAVA LRSGSDLSVF YQCSFEAYQD TLYVHSNRQF YRDCDVYGTV DFIFGNAAAV LQNCNIFARR PRSKTNTITA QGRSDPNQNT GIIIHNSRVT
401: AASDLRPVLG STKTYLGRPW RQYSRTVFMK TSLDSLIDPR GWLEWDGNFA LKTLFYAEFQ NTGPGASTSG RVTWPGFRVL GSASEASKFT VGTFLAGGSW
501: IPSSVPFTSG L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)