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AT2G45190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Plant-specific transcription factor YABBY family protein
Curator
Summary (TAIR10)
Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS).
Computational
Description (TAIR10)
ABNORMAL FLORAL ORGANS (AFO); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT4G00180.1); Has 454 Blast hits to 452 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 436; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWJAeggNOG:ENOG410YG5NEMBL:BT026409EnsemblPlants:AT2G45190EnsemblPlants:AT2G45190.1entrez:819127ExpressionAtlas:Q0V811
Gene3D:1.10.30.10GeneID:819127GO:GO:0007275Gramene:AT2G45190.1hmmpanther:PTHR31675hmmpanther:PTHR31675:SF0IntAct:Q0V811
InterPro:IPR006780InterPro:IPR009071KEGG:ath:AT2G45190OMA:NESLMPVPANTHER:PTHR31675PaxDb:Q0V811Pfam:O22152
Pfam:PF04690PhylomeDB:Q0V811ProteinModelPortal:Q0V811RefSeq:NP_566037.1STRING:3702.AT2G45190.1SUPFAM:SSF47095TAIR:AT2G45190
tair10-symbols:AFOtair10-symbols:FILtair10-symbols:YAB1UniGene:At.10852UniProt:O22152UniProt:Q0V811
Coordinates (TAIR10) chr2:-:18628450..18630552
Molecular Weight (calculated) 25780.90 Da
IEP (calculated) 7.27
GRAVY (calculated) -0.45
Length 229 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMSSMSSPS SAVCSPDHFS PSDHLCYVQC NFCQTILAVN VPYTSLFKTV TVRCGCCTNL LSVNMRSYVL PASNQLQLQL GPHSYFNPQD ILEELRDAPS
101: NMNMMMMNQH PTMNDIPSFM DLHQQHEIPK APPVNRPPEK RQRVPSAYNR FIKEEIQRIK AGNPDISHRE AFSAAAKNWA HFPHIHFGLV PDNQPVKKTN
201: MPQQEGEDNM VMKEGFYAPA AANVGVTPY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)