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AT2G45170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30208757 (2019): plant-type vacuole plant-type vacuole membrane
  • PMID:26616142 (2016): plastid
  • PMID:24566535 (2014): plant-type vacuole
  • PMID:17098847 (2007): cytosol
  • PMID:17098847 (2007): plant-type vacuole
  • PMID:15860017 (2005): plant-type vacuole
  • PMID:15494556 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AUTOPHAGY 8E
Curator
Summary (TAIR10)
Involved in autophagy. Under nutrient starvation the protein localizes to autophagosomes.
Computational
Description (TAIR10)
AUTOPHAGY 8E (ATG8E); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G16520.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:4461eggNOG:ENOG4111JATeggNOG:KOG1654EMBL:AB073179
EMBL:AC002387EMBL:AF412106EMBL:AY074388EMBL:CP002685
EnsemblPlants:AT2G45170EnsemblPlants:AT2G45170.1EnsemblPlants:AT2G45170.2entrez:819125
GeneID:819125Genevisible:Q8S926GO:GO:0000421GO:GO:0005737
GO:GO:0005776GO:GO:0005874GO:GO:0006914GO:GO:0009267
GO:GO:0015031GO:GO:0016020GO:GO:0033110Gramene:AT2G45170.1
Gramene:AT2G45170.2hmmpanther:PTHR10969hmmpanther:PTHR10969:SF39HOGENOM:HOG000232034
InterPro:IPR004241InterPro:IPR029071KEGG:ath:AT2G45170KO:K08341
OMA:WAYKEENPANTHER:PTHR10969PaxDb:Q8S926Pfam:PF02991
Pfam:Q8S926PIR:C84887PRIDE:Q8S926PRO:PR:Q8S926
ProteinModelPortal:Q8S926Proteomes:UP000006548RefSeq:NP_182042.2RefSeq:NP_850431.2
SMR:Q8S926STRING:3702.AT2G45170.1SUPFAM:SSF54236TAIR:AT2G45170
tair10-symbols:ATATG8Etair10-symbols:ATG8EUniGene:At.24840UniProt:Q8S926
Coordinates (TAIR10) chr2:+:18624545..18625526
Molecular Weight (calculated) 13947.80 Da
IEP (calculated) 8.77
GRAVY (calculated) -0.46
Length 122 amino acids
Sequence (TAIR10)
(BLAST)
001: MNKGSIFKMD NDFEKRKAEA GRIREKYPDR IPVIVEKAEK SEVPNIDKKK YLVPSDLTVG QFVYVIRKRI KLSAEKAIFI FVDNVLPPTG ELMSSVYEDK
101: KDEDGFLYIT YSGENTFGAS SI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)