AT2G45100.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Cyclin/Brf1-like TBP-binding protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Cyclin/Brf1-like TBP-binding protein; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription regulator activity, transcription activator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670), Brf1-like TBP-binding (InterPro:IPR011665); BEST Arabidopsis thaliana protein match is: Cyclin/Brf1-like TBP-binding protein (TAIR:AT3G09360.1); Has 2756 Blast hits to 2323 proteins in 394 species: Archae - 462; Bacteria - 31; Metazoa - 731; Fungi - 345; Plants - 127; Viruses - 25; Other Eukaryotes - 1035 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:18595348..18598088 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62957.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.81 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 557 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVWCKHCGKN VPGIRPYDAA LSCDLCGRIL ENFNFSTEVT FVKNAAGQSQ ASGNILKSVQ SGMSSSRERI IRKATDELMN LRDALGIGDD RDDVIVMASN 101: FFRIALDHNF TKGRSKELVF SSCLYLTCRQ FKLAVLLIDF SSYLRVSVYD LGSVYLQLCD MLYITENHNY EKLVDPSIFI PRFSNMLLKG AHNNKLVLTA 201: THIIASMKRD WMQTGRKPSG ICGAALYTAA LSHGIKCSKT DIVNIVHICE ATLTKRLIEF GDTEAASLTA DELSKTEREK ETAALRSKRK PNFYKEGVVL 301: CMHQDCKPVD YGLCESCYDE FMTVSGGLEG GSDPPAFQRA EKERMEEKAS SEENDKQVNL DGHSDESSTL SDVDDRELDC YFRTPEEVRL VKIFFDHENP 401: GYDEKEAAKK AAGLNACNNA SNIFEASKAA AAKSRKEKRQ QRAEEEKNAP PPATGIEAVD SMVKRKKFRD INCDYLEELF DASVEKSPKR SKTETVMEKK 501: KKEEHEIVEN EQEEEDYAAP YEQDEEDYAA PYEMNTDKKF YESEVEEEED GYDFGLY |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)