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AT2G44950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : histone mono-ubiquitination 1
Curator
Summary (TAIR10)
The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.
Computational
Description (TAIR10)
histone mono-ubiquitination 1 (HUB1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein homodimerization activity, zinc ion binding; INVOLVED IN: in 10 processes; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: histone mono-ubiquitination 2 (TAIR:AT1G55250.1); Has 39567 Blast hits to 24086 proteins in 1905 species: Archae - 719; Bacteria - 4806; Metazoa - 20260; Fungi - 3821; Plants - 2415; Viruses - 125; Other Eukaryotes - 7421 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2085-MONOMERBioGrid:4440EC:6.3.2.-eggNOG:ENOG410Y5C6eggNOG:KOG0978EMBL:AC002388EMBL:AY081322
EMBL:BT010360EMBL:CP002685EnsemblPlants:AT2G44950EnsemblPlants:AT2G44950.1entrez:819104Gene3D:3.30.40.10GeneID:819104
Genevisible:Q8RXD6GO:GO:0004842GO:GO:0005634GO:GO:0005739GO:GO:0006513GO:GO:0008270GO:GO:0009817
GO:GO:0009965GO:GO:0010162GO:GO:0010228GO:GO:0010389GO:GO:0010390GO:GO:0016049GO:GO:0016874
GO:GO:0033523GO:GO:0042803GO:GO:0045087GO:GO:0051301Gramene:AT2G44950.1hmmpanther:PTHR23163hmmpanther:PTHR23163:SF3
HOGENOM:HOG000006004InParanoid:Q8RXD6IntAct:Q8RXD6InterPro:IPR001841InterPro:IPR013083InterPro:IPR017907iPTMnet:Q8RXD6
KEGG:ath:AT2G44950KO:K10696ncoils:CoilOMA:TIGSAYEPaxDb:Q8RXD6Pfam:PF13920Pfam:Q8RXD6
Pfscan:PS50089PhylomeDB:Q8RXD6PIR:T00397PIR:T00398PRIDE:Q8RXD6PRO:PR:Q8RXD6PROSITE:PS00518
PROSITE:PS50089ProteinModelPortal:Q8RXD6Proteomes:UP000006548RefSeq:NP_182022.2scanprosite:PS00518SMART:SM00184SMR:Q8RXD6
STRING:3702.AT2G44950.1SUPFAM:SSF57850TAIR:AT2G44950tair10-symbols:HUB1tair10-symbols:RDO4UniGene:At.43266UniPathway:UPA00143
UniProt:Q8RXD6
Coordinates (TAIR10) chr2:-:18542602..18548247
Molecular Weight (calculated) 99724.40 Da
IEP (calculated) 6.82
GRAVY (calculated) -0.67
Length 878 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)