AT2G44920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (TAIR:AT5G55000.1); Has 14558 Blast hits to 5841 proteins in 857 species: Archae - 260; Bacteria - 11175; Metazoa - 170; Fungi - 0; Plants - 186; Viruses - 55; Other Eukaryotes - 2712 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:18524419..18526236 | ||||||||
| Molecular Weight (calculated) | 22432.50 Da | ||||||||
| IEP (calculated) | 9.37 | ||||||||
| GRAVY (calculated) | -0.15 | ||||||||
| Length | 210 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MVILSNVSLF SCCNISQKPS LFSPSSRSSH CPIRCSQSQE GKEVVTSPLR SVVWSLGEEV SKRSLFALVS ASLFFVDPAL AFKGGGPYGQ GVTRGQDLSG 101: KDFSGQTLIR QDFKTSILRQ ANFKGAKLLG ASFFDADLTG ADLSEADLRG ADFSLANVTK VNLTNANLEG ATVTGNTSFK GSNITGAGEK RKENFHNNNK 201: HISLLPLSFT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)