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AT2G44910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homeobox-leucine zipper protein 4
Curator
Summary (TAIR10)
Encodes a homeodomain protein whose expression displays a dependence on phyB for both red and far-red light response. Also involved in the shade avoidance syndrome.
Computational
Description (TAIR10)
homeobox-leucine zipper protein 4 (HB4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to hormone stimulus, shade avoidance, regulation of transcription, DNA-dependent, response to far red light, regulation of gene-specific transcription; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), HD-ZIP protein, N-terminal (InterPro:IPR006712), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox-leucine zipper protein 3 (TAIR:AT3G60390.1); Has 8851 Blast hits to 8789 proteins in 513 species: Archae - 0; Bacteria - 2; Metazoa - 6351; Fungi - 241; Plants - 2079; Viruses - 4; Other Eukaryotes - 174 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:AB493589EnsemblPlants:AT2G44910
EnsemblPlants:AT2G44910.1entrez:819100ExpressionAtlas:C0SV86Gene3D:1.10.10.60
GeneID:819100GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0043565Gramene:AT2G44910.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF269
InterPro:IPR001356InterPro:IPR003106InterPro:IPR006712InterPro:IPR009057
InterPro:IPR017970KEGG:ath:AT2G44910KO:K09338ncoils:Coil
OMA:HLYMHMTPaxDb:C0SV86Pfam:P92953Pfam:PF00046
Pfam:PF02183Pfam:PF04618Pfscan:PS50071PhylomeDB:C0SV86
PhylomeDB:P92953PRIDE:C0SV86PROSITE:PS00027PROSITE:PS50071
ProteinModelPortal:C0SV86RefSeq:NP_182018.1scanprosite:PS00027SMART:SM00340
SMART:SM00389SMR:C0SV86STRING:3702.AT2G44910.1SUPFAM:SSF46689
TAIR:AT2G44910tair10-symbols:ATHB-4tair10-symbols:ATHB4tair10-symbols:HB4
UniGene:At.44957UniProt:C0SV86UniProt:P92953
Coordinates (TAIR10) chr2:-:18517887..18519525
Molecular Weight (calculated) 34817.80 Da
IEP (calculated) 9.60
GRAVY (calculated) -0.74
Length 318 amino acids
Sequence (TAIR10)
(BLAST)
001: MGERDDGLGL SLSLGNSQQK EPSLRLNLMP LTTSSSSSSF QHMHNQNNNS HPQKIHNISW THLFQSSGIK RTTAERNSDA GSFLRGFNVN RAQSSVAVVD
101: LEEEAAVVSS PNSAVSSLSG NKRDLAVARG GDENEAERAS CSRGGGSGGS DDEDGGNGDG SRKKLRLSKD QALVLEETFK EHSTLNPKQK LALAKQLNLR
201: ARQVEVWFQN RRARTKLKQT EVDCEYLKRC CDNLTEENRR LQKEVSELRA LKLSPHLYMH MTPPTTLTMC PSCERVSSSA ATVTAAPSTT TTPTVVGRPS
301: PQRLTPWTAI SLQQKSGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)