AT2G44900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARABIDILLO-1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
ARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ARABIDILLO-1 (ARABIDILLO-1); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: lateral root development; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARABIDILLO-2 (TAIR:AT3G60350.1); Has 10074 Blast hits to 5287 proteins in 284 species: Archae - 0; Bacteria - 24; Metazoa - 4121; Fungi - 736; Plants - 4117; Viruses - 0; Other Eukaryotes - 1076 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18511719..18515762 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100648.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 930 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRRVRRKLE EEKGKDKVVV LPSYPETSIS NEEDLVAPEL LHGFVDWISL PYDTVLQLFT CLNYRDRASL ASTCKTWRCL GASSCLWTSL DLRPHKFDAS 101: MAASLASRCV NLHYLRFRGV ESADSLIHLK ARNLIEVSGD YCKKITDATL SMIVARHEAL ESLQLGPDFC ERITSDAIKA VAFCCPKLKK LRLSGIRDVT 201: SEAIEALAKH CPQLNDLGFL DCLNIDEEAL GKVVSVRYLS VAGTSNIKWS IASNNWDKLP KLTGLDVSRT DIGPTAVSRF LTSSQSLKVL CALNCHVLEE 301: DESLISYNRF KGKVLLALFT NVFDGLASIF ADNTKKPKDI FAYWRELMKT TKDKTINDFI HWIEWIISHT LLRTAECNPE GLDDFWLNEG AALLLNLMQS 401: SQEDVQERSA TGLATFVVVD DENASIDCGR AEAVMKDGGI RLLLELAKSW REGLQSEAAK AIANLSVNAN IAKSVAEEGG IKILAGLAKS MNRLVAEEAA 501: GGLWNLSVGE EHKNAIAQAG GVKALVDLIF RWPNGCDGVL ERAAGALANL AADDKCSMEV AKAGGVHALV MLARNCKYEG VQEQAARALA NLAAHGDSNN 601: NNAAVGQEAG ALEALVQLTK SPHEGVRQEA AGALWNLSFD DKNRESISVA GGVEALVALA QSCSNASTGL QERAAGALWG LSVSEANSVA IGREGGVPPL 701: IALARSEAED VHETAAGALW NLAFNPGNAL RIVEEGGVPA LVHLCSSSVS KMARFMAALA LAYMFDGRMD EYALMIGTSS SESTSKNISL DGARNMALKH 801: IEAFVLSFID PHIFESPVVS STPTMLAQVT ERARIQEAGH LRCSGAEIGR FVTMLRNPDS TLKACAAFAL LQFTIPGGRH AMHHVSLMQN GGESRFLRSA 901: AASAKTPREA KIFTKILLRN LEHHQAESSI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)