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AT2G44860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L24e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L24e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L24e (InterPro:IPR000988), TRASH (InterPro:IPR011017); BEST Arabidopsis thaliana protein match is: Ribosomal protein L24e family protein (TAIR:AT3G53020.1); Has 1527 Blast hits to 1527 proteins in 399 species: Archae - 307; Bacteria - 5; Metazoa - 446; Fungi - 310; Plants - 198; Viruses - 0; Other Eukaryotes - 261 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2075eggNOG:KOG1723EMBL:AC002388EMBL:AK317317EMBL:AY049251EMBL:AY087358EMBL:AY098951
EMBL:CP002685EnsemblPlants:AT2G44860EnsemblPlants:AT2G44860.1EnsemblPlants:AT2G44860.2entrez:819095ExpressionAtlas:O22165Gene3D:2.30.170.20
GeneID:819095Genevisible:O22165GO:GO:0005730GO:GO:0022625GO:GO:0042254Gramene:AT2G44860.1Gramene:AT2G44860.2
hmmpanther:PTHR10792hmmpanther:PTHR10792:SF8HOGENOM:HOG000184344InParanoid:O22165InterPro:IPR000988InterPro:IPR011017InterPro:IPR023441
InterPro:IPR023442InterPro:IPR024546KEGG:ath:AT2G44860KO:K02896OMA:KAPHAGKPANTHER:PTHR10792PANTHER:PTHR10792:SF8
PaxDb:O22165Pfam:O22165Pfam:PF01246PhylomeDB:O22165PIR:T00407PRIDE:O22165PRO:PR:O22165
PROSITE:PS01073ProteinModelPortal:O22165Proteomes:UP000006548RefSeq:NP_001078059.1RefSeq:NP_182013.1scanprosite:PS01073SMART:SM00746
SMR:O22165STRING:3702.AT2G44860.1SUPFAM:SSF57716TAIR:AT2G44860UniGene:At.24272UniGene:At.69628UniProt:B9DGX5
UniProt:O22165
Coordinates (TAIR10) chr2:-:18501034..18502128
Molecular Weight (calculated) 18943.10 Da
IEP (calculated) 10.81
GRAVY (calculated) -1.13
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MRLEKCWFCS STIYPGHGIQ FVRNDAKIFR FCRSKCHKNF KMKRNPRKVK WTKAFRAAHG KDMTKDTTFE FEKKRNRPER YDRNVTENTL MAIKKIAKIR
101: TAREAKHIEN RLKPNKQKKL NDDMKELDQN IHMVQAPGAQ KIKVDVSEKK SVQNEAMEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)