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AT2G44850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.977
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0565 (InterPro:IPR018881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45380.1); Has 138 Blast hits to 138 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110057eggNOG:KOG2800EMBL:AC002388EMBL:CP002685EnsemblPlants:AT2G44850EnsemblPlants:AT2G44850.1entrez:819094
ExpressionAtlas:O22166GeneID:819094Gramene:AT2G44850.1hmmpanther:PTHR31296hmmpanther:PTHR31296:SF1HOGENOM:HOG000272681InterPro:IPR018881
OMA:TEMAWHEPANTHER:PTHR31296:SF1Pfam:PF10561PhylomeDB:O22166PIR:T00408Proteomes:UP000006548RefSeq:NP_182012.1
STRING:3702.AT2G44850.1TAIR:AT2G44850UniGene:At.24272UniGene:At.69628UniProt:O22166
Coordinates (TAIR10) chr2:+:18498672..18500823
Molecular Weight (calculated) 44729.30 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.16
Length 400 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLVKNRDDE TCRRTEERKN PGENGNLNSS SVDHRFTSAS RAFTQKKLDD LKSLFVSLAS KSHSNDQYVS YPVFQVLTIC VSDLESFLDI KSCICYMKIV
101: IKILAFRSKI LNFDQQVPSA NAIFFHGDKV QDTGNHVIER LYDLQKVAEI IVSKFGNSVN AWVVEASVFN GPFAIYKDFV PSVNHMGAPK SYSPVGFPAS
201: SSIVSLLSSC LHEVLKEGTD VCLIDQIASV HHCPKTIVLG FSKGGVVMNQ LMSEISSLDT NFAKTSSAMV EESTSQHEKI QIIPASKESF LNSISEVHYI
301: DVGLNSSGAY ITDHNVVQRI SQRLARGADS LRIVIHGTPR QWCDELRGWI RKEKDELVRL LKAETENSGG KLQVCERFYF SDRLADLQMH FEIIDAMDVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)