suba logo
AT2G44840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ethylene-responsive element binding factor 13
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
Computational
Description (TAIR10)
ethylene-responsive element binding factor 13 (ERF13); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 1 (TAIR:AT4G17500.1); Has 5576 Blast hits to 5517 proteins in 249 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 5557; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JD73eggNOG:ENOG41116MWEMBL:AC002388EMBL:AF325089
EMBL:AF370540EMBL:AY072471EMBL:AY088387EMBL:CP002685
EnsemblPlants:AT2G44840EnsemblPlants:AT2G44840.1entrez:819093Gene3D:3.30.730.10
GeneID:819093Genevisible:Q8L9K1GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006952GO:GO:0009873
GO:GO:0010200Gramene:AT2G44840.1hmmpanther:PTHR31190hmmpanther:PTHR31190:SF21
HOGENOM:HOG000239314InParanoid:Q8L9K1InterPro:IPR001471InterPro:IPR016177
KEGG:ath:AT2G44840OMA:KYEPVRIPaxDb:Q8L9K1Pfam:PF00847
Pfam:Q8L9K1Pfscan:PS51032PhylomeDB:Q8L9K1PIR:T00409
PRINTS:PR00367PRO:PR:Q8L9K1PROSITE:PS51032ProteinModelPortal:Q8L9K1
Proteomes:UP000006548RefSeq:NP_182011.1SMART:SM00380SMR:Q8L9K1
STRING:3702.AT2G44840.1SUPFAM:SSF54171TAIR:AT2G44840tair10-symbols:ATERF13
tair10-symbols:EREBPtair10-symbols:ERF13UniGene:At.29014UniProt:Q8L9K1
Coordinates (TAIR10) chr2:+:18495440..18496120
Molecular Weight (calculated) 25354.40 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.79
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSDSVNNG VNSRMYFRNP SFSNVILNDN WSDLPLSVDD SQDMAIYNTL RDAVSSGWTP SVPPVTSPAE ENKPPATKAS GSHAPRQKGM QYRGVRRRPW
101: GKFAAEIRDP KKNGARVWLG TYETPEDAAV AYDRAAFQLR GSKAKLNFPH LIGSCKYEPV RIRPRRRSPE PSVSDQLTSE QKRESHVDDG ESSLVVPELD
201: FTVDQFYFDG SLLMDQSECS YSDNRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)