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AT2G44680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : casein kinase II beta subunit 4
Curator
Summary (TAIR10)
Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.
Computational
Description (TAIR10)
casein kinase II beta subunit 4 (CKB4); CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: casein kinase II beta chain 3 (TAIR:AT3G60250.1); Has 1093 Blast hits to 1091 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 429; Fungi - 285; Plants - 156; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5041eggNOG:KOG3092EMBL:AC003672EMBL:AY052265EMBL:AY060523EMBL:AY062585EMBL:AY088075
EMBL:AY093344EMBL:CP002685EnsemblPlants:AT2G44680EnsemblPlants:AT2G44680.1entrez:819076Gene3D:1.10.1820.10Gene3D:2.20.25.20
GeneID:819076Genevisible:O80507GO:GO:0004674GO:GO:0005634GO:GO:0005737GO:GO:0005956GO:GO:0006468
GO:GO:0007623GO:GO:0019887GO:GO:0042753GO:GO:0048573hmmpanther:PTHR11740hmmpanther:PTHR11740:SF4HOGENOM:HOG000039270
InParanoid:O80507InterPro:IPR000704InterPro:IPR016149InterPro:IPR016150KEGG:ath:AT2G44680KO:K03115OMA:MAYGNMK
PANTHER:PTHR11740PaxDb:O80507Pfam:O80507Pfam:PF01214PhylomeDB:O80507PIR:T01595PRIDE:O80507
PRINTS:PR00472PRO:PR:O80507PROSITE:PS01101ProteinModelPortal:O80507Proteomes:UP000006548Reactome:R-ATH-2514853RefSeq:NP_181996.1
RefSeq:NP_850421.1scanprosite:PS01101SMART:SM01085SMR:O80507STRING:3702.AT2G44680.1SUPFAM:0047698SUPFAM:SSF57798
TAIR:AT2G44680tair10-symbols:CKB4UniGene:At.12539UniProt:O80507
Coordinates (TAIR10) chr2:-:18426898..18428166
Molecular Weight (calculated) 31633.10 Da
IEP (calculated) 5.20
GRAVY (calculated) -0.57
Length 283 amino acids
Sequence (TAIR10)
(BLAST)
001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)