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AT2G44380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G43520.1); Has 1997 Blast hits to 742 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 1986; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JBT5eggNOG:ENOG410Z3DCEMBL:AC004521EMBL:AK176732
EMBL:BT010647EMBL:CP002685EnsemblPlants:AT2G44380EnsemblPlants:AT2G44380.1
entrez:819045GeneID:819045GO:GO:0047134Gramene:AT2G44380.1
hmmpanther:PTHR13871hmmpanther:PTHR13871:SF42HOGENOM:HOG000093099InterPro:IPR004146
KEGG:ath:AT2G44380OMA:SECQYDVPfam:PF03107Pfam:PF07649
PhylomeDB:O64872PIR:T02393Proteomes:UP000006548RefSeq:NP_181966.1
SMR:O64872SUPFAM:SSF57889TAIR:AT2G44380UniGene:At.36766
UniGene:At.36767UniProt:O64872
Coordinates (TAIR10) chr2:-:18323590..18324333
Molecular Weight (calculated) 28273.90 Da
IEP (calculated) 6.00
GRAVY (calculated) -0.77
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)