AT2G44190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 cytosol 0.000 ASURE: cytoskeleton,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Family of unknown function (DUF566) | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a novel microtubule binding protein that preferentially associates with nuclear microtubules during mitosis and is essential during the mitotic and cytokinetic stages that generate the endosperm and embryo. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ENDOSPERM DEFECTIVE 1 (EDE1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF566) (TAIR:AT3G60000.2); Has 456 Blast hits to 444 proteins in 94 species: Archae - 0; Bacteria - 6; Metazoa - 141; Fungi - 55; Plants - 202; Viruses - 3; Other Eukaryotes - 49 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:18272346..18274332 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52596.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.32 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.71 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 474 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEARIGRSME HPSTPAINAP APVPPPSTRR PRVREVSSRF MSPISSSSSS SSSSSAGDLH QLTSNSPRHH HQHQNQRSTS AQRMRRQLKM QEGDENRPSE 101: TARSLDSPFP LQQVDGGKNP KQHIRSKPLK ENGHRLDTPT TAMLPPPSRS RLNQQRLLTA SAATRLLRSS GISLSSSTDG EEDNNNREIF KSNGPDLLPT 201: IRTQAKAFNT PTASPLSRSL SSDDASMFRD VRASLSLKNG VGLSLPPVAP NSKIQADTKK QKKALGQQAD VHSLKLLHNR YLQWRFANAN AEVKTQSQKA 301: QAERMFYSLG LKMSELSDSV QRKRIELQHL QRVKAVTEIV ESQTPSLEQW AVLEDEFSTS LLETTEALLN ASLRLPLDSK IKVETKELAE ALVVASKSME 401: GIVQNIGNLV PKTQEMETLM SELARVSGIE KASVEDCRVA LLKTHSSQME ECYLRSQLIQ HQKKCHQQEC TTSV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)