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AT2G44065.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein L2 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L2 family; FUNCTIONS IN: structural constituent of ribosome, RNA binding, transferase activity; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L2, C-terminal (InterPro:IPR022669), Ribosomal protein L2, conserved site (InterPro:IPR022671), Translation protein SH3-like, subgroup (InterPro:IPR014722), Ribosomal protein L2, bacterial-type (InterPro:IPR005880), Ribosomal protein L2 (InterPro:IPR002171); BEST Arabidopsis thaliana protein match is: ribosomal protein L2 (TAIR:ATCG01310.1); Has 10726 Blast hits to 10726 proteins in 3680 species: Archae - 316; Bacteria - 5707; Metazoa - 478; Fungi - 286; Plants - 1243; Viruses - 0; Other Eukaryotes - 2696 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0090eggNOG:KOG0438EMBL:AC004005EMBL:AY063831EMBL:AY091281EMBL:CP002685EnsemblPlants:AT2G44065
EnsemblPlants:AT2G44065.1EnsemblPlants:AT2G44065.2entrez:819012Gene3D:2.30.30.30Gene3D:4.10.950.10GeneID:819012GO:GO:0003735
GO:GO:0005840GO:GO:0006412Gramene:AT2G44065.1Gramene:AT2G44065.2hmmpanther:PTHR13691IntAct:Q8VZU4InterPro:IPR002171
InterPro:IPR008991InterPro:IPR014722InterPro:IPR014726InterPro:IPR022669InterPro:IPR022671KEGG:ath:AT2G44065OMA:GMMRIGT
PANTHER:PTHR13691Pfam:PF03947PhylomeDB:Q8VZU4PROSITE:PS00467Proteomes:UP000006548RefSeq:NP_566007.1RefSeq:NP_973685.1
scanprosite:PS00467SMART:SM01382SMR:Q8VZU4STRING:3702.AT2G44065.1SUPFAM:SSF50104TAIR:AT2G44065UniGene:At.175
UniProt:Q8VZU4
Coordinates (TAIR10) chr2:+:18228860..18230368
Molecular Weight (calculated) 22843.10 Da
IEP (calculated) 11.33
GRAVY (calculated) -0.43
Length 214 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGLVALCRA RASASSSLFN SVIRPAFRNF STGFADTQNK SLVAQMKEEM LHMDINSMIG SSMPLGMMRI GTIIHNIEMN PGQGAKMVRA AGTNAKILKE
101: PAKGKCLIKL PSGDTKWINA KCRATIGTVS NPSHGTKKLY KAGQSRWLGI RPKVRGVAMN PCDHPHGGGE GKSKSSGSRG RTSVSPWGKP CKGGYKSASV
201: KKKKKRLAEA AAKM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)