AT2G44030.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 0.847 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Galactose oxidase/kelch repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G46050.1); Has 1608 Blast hits to 1542 proteins in 125 species: Archae - 6; Bacteria - 108; Metazoa - 399; Fungi - 9; Plants - 1057; Viruses - 2; Other Eukaryotes - 27 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:18220086..18221228 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 42862.30 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.50 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||
Length | 380 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MTTEEDMRSS SSESSPKSFL SLPYDVVFNC LSRVSRTHDP ILSLVSKSFR SLLALPDLEA ERFRILKNET CLYVCLNLNN NNNPNPSWFI LSQTPKHKLI 101: PLPSLPYPDP HPNCSTVVST GSEIYLLGGF VAKEKRSRRA YVLDCKSHQW RRLPKMRIAR KEAAANVIDG KINVYGGCSS EYHNSVNWGE IYDPMTQTWE 201: PFPEGALNKE GVIPCALIKD GIAFPDCGLL ISGKVYDTTT MDTLDYNTPM DKLDLCPNVC MLKIDNQDFQ ASVSDGKLKL VRCRGAMAWH WTVGGLEELS 301: CNYLLSVASP GGGRRVTVWW KTYTKECKTE IWCALILLER ELVWGVIEWS ENVFTLPGSE SDSDSNSFLL HYELVTLARH |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)