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AT2G43770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:24832081 (2014): nucleus
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 103598 Blast hits to 39924 proteins in 946 species: Archae - 84; Bacteria - 11408; Metazoa - 41998; Fungi - 22646; Plants - 13468; Viruses - 6; Other Eukaryotes - 13988 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSEWeggNOG:KOG0265EMBL:AC002333EMBL:AY093182EMBL:BT008828EMBL:CP002685EnsemblPlants:AT2G43770
EnsemblPlants:AT2G43770.1entrez:818980Gene3D:2.130.10.10GeneID:818980GO:GO:0080008Gramene:AT2G43770.1hmmpanther:PTHR22847
hmmpanther:PTHR22847:SF501HOGENOM:HOG000091644IntAct:O22826InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775
InterPro:IPR020472InterPro:IPR024977KEGG:ath:AT2G43770KO:K12857OMA:MSGHEGEPfam:PF00400Pfam:PF12894
Pfscan:PS50082Pfscan:PS50294PhylomeDB:O22826PIR:C84870PRINTS:PR00320PROSITE:PS00678PROSITE:PS50082
PROSITE:PS50294Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165RefSeq:NP_181905.1scanprosite:PS00678SMART:SM00320
SMR:O22826STRING:3702.AT2G43770.1SUPFAM:SSF50978TAIR:AT2G43770UniGene:At.66405UniProt:O22826
Coordinates (TAIR10) chr2:-:18134272..18135303
Molecular Weight (calculated) 37887.90 Da
IEP (calculated) 7.36
GRAVY (calculated) -0.48
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)