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AT2G43640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.764
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Signal recognition particle, SRP9/SRP14 subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Signal recognition particle, SRP9/SRP14 subunit; FUNCTIONS IN: 7S RNA binding, endoplasmic reticulum signal peptide binding, RNA binding; INVOLVED IN: negative regulation of translational elongation, protein targeting, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP14 subunit (InterPro:IPR003210), Signal recognition particle, SRP9/SRP14 subunit (InterPro:IPR009018); Has 216 Blast hits to 216 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 35; Plants - 46; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
BioGrid:4302eggNOG:ENOG4111PSFeggNOG:KOG1761EMBL:AC002333EMBL:AK227403EMBL:AY088850EMBL:BT003088
EMBL:CP002685EMBL:Y10116EnsemblPlants:AT2G43640EnsemblPlants:AT2G43640.1EnsemblPlants:AT2G43640.2entrez:818966ExpressionAtlas:O04421
Gene3D:3.30.720.10GeneID:818966Genevisible:O04421GO:GO:0005786GO:GO:0006614GO:GO:0008312GO:GO:0030942
Gramene:AT2G43640.2hmmpanther:PTHR12013HOGENOM:HOG000184883InParanoid:O04421IntAct:O04421InterPro:IPR003210InterPro:IPR009018
KEGG:ath:AT2G43640KO:K03104OMA:AKDHQRFPANTHER:PTHR12013PaxDb:O04421Pfam:O04421Pfam:PF02290
PhylomeDB:O04421PIR:F84868PRIDE:O04421PRO:PR:O04421ProDom:PD009170ProteinModelPortal:O04421Proteomes:UP000006548
Reactome:R-ATH-1799339RefSeq:NP_001078050.1RefSeq:NP_181892.1SMR:B9DGY4SMR:O04421STRING:3702.AT2G43640.1SUPFAM:SSF54762
TAIR:AT2G43640UniGene:At.20529UniGene:At.46807UniProt:B9DGY4UniProt:O04421
Coordinates (TAIR10) chr2:-:18097614..18098619
Molecular Weight (calculated) 13781.80 Da
IEP (calculated) 10.96
GRAVY (calculated) -0.83
Length 121 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLLQLDPFL NELTSMFEKS KEKGSVWVTL KRSSLKSKVQ KRKLSSVGES IEYRCLIRAT DGKKTVSTSV GAKDHQRFQA SYATILKAHM TALKKRERKD
101: RKKSTEAEKK ESTSTTKSKK L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)