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AT2G43630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, nucleus, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67 Blast hits to 67 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J01PeggNOG:ENOG410YWYGEMBL:AY065451EMBL:AY096466EMBL:CP002685EnsemblPlants:AT2G43630EnsemblPlants:AT2G43630.1
entrez:818965GeneID:818965GO:GO:0005634GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009941
Gramene:AT2G43630.1hmmpanther:PTHR35483hmmpanther:PTHR35483:SF1HOGENOM:HOG000006260KEGG:ath:AT2G43630OMA:PWKAIEKPhylomeDB:Q8VYY8
Proteomes:UP000006548RefSeq:NP_850396.1STRING:3702.AT2G43630.1TAIR:AT2G43630UniGene:At.20529UniProt:Q8VYY8
Coordinates (TAIR10) chr2:+:18096255..18097344
Molecular Weight (calculated) 30701.20 Da
IEP (calculated) 8.40
GRAVY (calculated) -0.60
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFTQANCFR PSYYPARITR PNCISSVPIR SSVRFDHFPR TSFTLRATAA VSTQFSPLLD HRRRLPTGKS KQSSAVCLFG GKDKPDGSDE ISPWKAIEKA
101: MGKKSVEDML REQIQKKDFY DTDSGGNMPP RGGGSGGGGG NGEERPEGSG GEDGGLAGIA DETLQVVLAT LGFIFLYTYI ITGEELVKLA RDYIRFLMGR
201: PKTVRLTRAM DSWNGFLEKM SRQRVYDEYW LEKAIINTPT WYDSPEKYRR VIKAYVDSNS DEAYVESNSD EVSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)