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AT2G43560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16648217 (2006): plastid
  • PMID:14729914 (2004): plastid
  • PMID:11826309 (2002): plastid
  • PMID:11719511 (2002): plastid
FP Images

Arabidopsis cell culture (plastidal marker)

At2g43560-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506-binding protein 13 (TAIR:AT5G45680.1); Has 8823 Blast hits to 8572 proteins in 1646 species: Archae - 42; Bacteria - 4685; Metazoa - 1489; Fungi - 464; Plants - 749; Viruses - 0; Other Eukaryotes - 1394 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G43560-MONOMERBioGrid:4294EC:5.2.1.8eggNOG:COG0545eggNOG:KOG0552EMBL:AC002335EMBL:AY056125
EMBL:AY113988EMBL:CP002685EnsemblPlants:AT2G43560EnsemblPlants:AT2G43560.1entrez:818958GeneID:818958Genevisible:O22870
GO:GO:0003755GO:GO:0006457GO:GO:0009507GO:GO:0009534GO:GO:0009543GO:GO:0009570GO:GO:0009579
GO:GO:0031977Gramene:AT2G43560.1HOGENOM:HOG000154887InParanoid:O22870IntAct:O22870InterPro:IPR001179KEGG:ath:AT2G43560
KO:K01802OMA:ETREQSCPaxDb:O22870Pfam:O22870Pfam:PF00254Pfscan:PS50059PhylomeDB:O22870
PIR:F84867PRIDE:O22870PRO:PR:O22870PROSITE:PS50059ProteinModelPortal:O22870Proteomes:UP000006548RefSeq:NP_181884.1
SMR:O22870STRING:3702.AT2G43560.1SUPFAM:SSF54534TAIR:AT2G43560UniGene:At.24392UniGene:At.48587UniProt:O22870
Coordinates (TAIR10) chr2:-:18073995..18075385
Molecular Weight (calculated) 23565.50 Da
IEP (calculated) 8.45
GRAVY (calculated) -0.08
Length 223 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASSPSLLL PLGSASRNGL TTKNPNSSRY IAARVIASET REQSCKISNL SSRREAMLLV LGVSGGLSMS SLAAYAAGLP PEDKPRLCEA ECEKELENVP
101: MVTTESGLQY KDIKVGRGPS PPVGFQVAAN YVAMVPSGQI FDSSLEKGLP YLFRVGSGQV IKGLDEGILS MKAGGKRRLY IPGPLAFPKG LVSAPGRPRV
201: APNSPVIFDV SLEFIPGLDS EEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)